LOCUS       NM_200773               1680 bp    mRNA    linear   VRT 27-DEC-2022
DEFINITION  Danio rerio vimentin like (viml), mRNA.
ACCESSION   NM_200773 XM_697268
VERSION     NM_200773.1
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 1680)
  AUTHORS   Zhang X, Zhou Q, Li X, Zou W and Hu X.
  TITLE     Integrating omics and traditional analyses to profile the
            synergistic toxicity of graphene oxide and triphenyl phosphate
  JOURNAL   Environ Pollut 263 (Pt A), 114473 (2020)
   PUBMED   33618456
REFERENCE   2  (bases 1 to 1680)
  AUTHORS   Goto H, Kimmey SC, Row RH, Matus DQ and Martin BL.
  TITLE     FGF and canonical Wnt signaling cooperate to induce paraxial
            mesoderm from tailbud neuromesodermal progenitors through
            regulation of a two-step epithelial to mesenchymal transition
  JOURNAL   Development 144 (8), 1412-1424 (2017)
   PUBMED   28242612
REFERENCE   3  (bases 1 to 1680)
  AUTHORS   Bayes A, Collins MO, Reig-Viader R, Gou G, Goulding D, Izquierdo A,
            Choudhary JS, Emes RD and Grant SG.
  TITLE     Evolution of complexity in the zebrafish synapse proteome
  JOURNAL   Nat Commun 8, 14613 (2017)
   PUBMED   28252024
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 1680)
  AUTHORS   Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I,
            Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y and
            Bobe J.
  TITLE     Gene evolution and gene expression after whole genome duplication
            in fish: the PhyloFish database
  JOURNAL   BMC Genomics 17, 368 (2016)
   PUBMED   27189481
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 1680)
  AUTHORS   Sager JJ, Torres GE and Burton EA.
  TITLE     The zebrafish homologue of the human DYT1 dystonia gene is widely
            expressed in CNS neurons but non-essential for early motor system
            development
  JOURNAL   PLoS One 7 (9), e45175 (2012)
   PUBMED   23028827
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC059604.1.
            
            On Jul 6, 2005 this sequence version replaced XM_697268.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC059604.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2168447, SAMEA4476741
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1680
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="wild-type"
                     /db_xref="taxon:7955"
                     /chromosome="2"
                     /map="2"
     gene            1..1680
                     /gene="viml"
                     /gene_synonym="zgc:73275"
                     /note="vimentin like"
                     /db_xref="GeneID:393746"
                     /db_xref="ZFIN:ZDB-GENE-040426-1743"
     exon            1..551
                     /gene="viml"
                     /gene_synonym="zgc:73275"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    7..9
                     /gene="viml"
                     /gene_synonym="zgc:73275"
                     /note="upstream in-frame stop codon"
     CDS             46..1389
                     /gene="viml"
                     /gene_synonym="zgc:73275"
                     /codon_start=1
                     /product="vimentin like"
                     /protein_id="NP_957067.1"
                     /db_xref="GeneID:393746"
                     /db_xref="ZFIN:ZDB-GENE-040426-1743"
                     /translation="

MSTSSYRKRFGDVSRSSALSSRQTFSSSARTRVSFGASSSPVIYASKSAKVRSSAAMPRLTSETLDFNLSDALNTEFKANRLNEKAQMQSLNDRFASYIEKVRFLEQQNKILSAELEQLRGQRSSRIADLYEEEMRDLRRQVDLLTTEKTRAEVMRDNLAEDVERLKEKLQDEMLQREDAENSMKSFRQDVDNAALARVDLERKVESLQDELAFLKNLHDEELAELQTQIQGQQVQVEMDMAKPDLTAALRDVRLQYENLASKNIQESEDWYKSKFADLTEAANRNNEALRLAKQETNEYRRQVQAITCELDALRGTNESLERQMREMEENFGMESSGFQDTIGRLEEDIGNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIAAPLPNFSSFNLRETMLESKLVPENTFTKKVLIKTIETRDGQVINESTQNHDDLE"

     misc_feature    46..288
                     /gene="viml"
                     /gene_synonym="zgc:73275"
                     /note="Intermediate filament head (DNA binding) region;
                     Region: Filament_head; pfam04732"
                     /db_xref="CDD:461414"
     misc_feature    292..1218
                     /gene="viml"
                     /gene_synonym="zgc:73275"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:459643"
     exon            552..612
                     /gene="viml"
                     /gene_synonym="zgc:73275"
                     /inference="alignment:Splign:2.1.0"
     exon            613..708
                     /gene="viml"
                     /gene_synonym="zgc:73275"
                     /inference="alignment:Splign:2.1.0"
     exon            709..870
                     /gene="viml"
                     /gene_synonym="zgc:73275"
                     /inference="alignment:Splign:2.1.0"
     exon            871..996
                     /gene="viml"
                     /gene_synonym="zgc:73275"
                     /inference="alignment:Splign:2.1.0"
     exon            997..1217
                     /gene="viml"
                     /gene_synonym="zgc:73275"
                     /inference="alignment:Splign:2.1.0"
     exon            1218..1261
                     /gene="viml"
                     /gene_synonym="zgc:73275"
                     /inference="alignment:Splign:2.1.0"
     exon            1262..1347
                     /gene="viml"
                     /gene_synonym="zgc:73275"
                     /inference="alignment:Splign:2.1.0"
     exon            1348..1658
                     /gene="viml"
                     /gene_synonym="zgc:73275"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gcagactaacctcatcgcagagctacaataaccataaactccatcatgtctacctcttcatatagaaagagattcggagatgtgtcccggagcagcgctttatccagtcgccagactttcagctcctccgcgcgcacacgagtgtcttttggcgcgtcctcgtctccggttatttacgcgtcgaaaagcgccaaagtccgaagtagcgctgccatgccacgacttacatccgagactttggattttaacctctcggacgctttaaacacggaattcaaggcgaatagactgaatgaaaaggcgcagatgcagtcgctgaatgaccgcttcgctagttacatcgagaaggtgcgctttctggagcagcagaataagatcctgagcgcggagctggagcagctgaggggtcagaggtcatctcgcatcgcagatctctatgaggaggagatgcgggatctgaggcggcaggtggatctgctgaccaccgagaaaacacgagctgaagtgatgcgagacaacctggctgaagatgtagagcgactcaaagagaaactgcaggacgagatgcttcagcgggaagatgcagagaacagcatgaagagtttcagacaggacgtggacaatgcggctcttgctcgagtggatctggagaggaaagtggagtctcttcaggacgaactggccttcctgaaaaacctccatgatgaggagctggcagagctgcagactcagattcagggccagcaggtgcaggtggagatggacatggctaaacctgatctgacagccgctctcagagacgtcagactgcagtatgaaaacctggcaagcaaaaacatacaggagtcagaggactggtacaaatccaagtttgcagacctgaccgaagctgctaacagaaataatgaagctctgcgactggccaagcaggagaccaatgagtaccggcgtcaggtgcaggcgatcacctgtgaactggacgctctcagaggaacaaacgagtctctagagcgtcagatgcgggagatggaggagaacttcggcatggagtcatctggttttcaggacaccatcggccggctggaggaggacattggcaacatgaaggacgagatggcgagacacctgcgtgaataccaggacctgctcaacgtcaagatggcgctagacatcgagatcgcaacctacagaaaactgctggagggagaggagagcagaattgctgctcctcttccaaacttctcctcctttaatctgagagaaacaatgctcgagtccaagcttgttcctgaaaacacatttactaagaaagttcttattaaaaccattgagaccagagatggccaggtgatcaatgagtcgacgcagaaccacgatgatctggagtgatgaagctgtaaatctctttgaatcctgaatctcagctcagtctgatgggaaaacacagtgtcctgcttctgagtgcctttacctgctgtaagatgtgtaataaggaaacaagaactttagcaaactgtgaatctttttactgtctctcaacctgcattcactttccacatactgtagcatttctgagccaacctaatgcagtctgagcaaaatgcttgattaaaaacagtcatagaagagtttgcatttctaataaaccttcatttgctaaaaaaaaaaaaaaaaaaaaaa

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