LOCUS       NM_200092               1138 bp    mRNA    linear   VRT 17-JAN-2021
DEFINITION  Danio rerio B cell receptor associated protein 31 (bcap31), mRNA.
ACCESSION   NM_200092
VERSION     NM_200092.1
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 1138)
  AUTHORS   Liu R, Hu X, Lu A, Song Y, Lian Z, Sun J and Sung YY.
  TITLE     Proteomic Profiling of Zebrafish Challenged by Spring Viremia of
            Carp Virus Provides Insight into Skin Antiviral Response
  JOURNAL   Zebrafish 17 (2), 91-103 (2020)
   PUBMED   32176570
REFERENCE   2  (bases 1 to 1138)
  AUTHORS   Cambier S, Rogeberg M, Georgantzopoulou A, Serchi T, Karlsson C,
            Verhaegen S, Iversen TG, Guignard C, Kruszewski M, Hoffmann L,
            Audinot JN, Ropstad E and Gutleb AC.
  TITLE     Fate and effects of silver nanoparticles on early life-stage
            development of zebrafish (Danio rerio) in comparison to silver
            nitrate
  JOURNAL   Sci Total Environ 610-611, 972-982 (2018)
   PUBMED   28838034
REFERENCE   3  (bases 1 to 1138)
  AUTHORS   Bayes A, Collins MO, Reig-Viader R, Gou G, Goulding D, Izquierdo A,
            Choudhary JS, Emes RD and Grant SG.
  TITLE     Evolution of complexity in the zebrafish synapse proteome
  JOURNAL   Nat Commun 8, 14613 (2017)
   PUBMED   28252024
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 1138)
  AUTHORS   Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M,
            Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD,
            Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov
            GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W and
            Hertzano R.
  TITLE     RFX transcription factors are essential for hearing in mice
  JOURNAL   Nat Commun 6, 8549 (2015)
   PUBMED   26469318
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 1138)
  AUTHORS   Tseng LC, Zhang C, Cheng CM, Xu H, Hsu CH and Jiang YJ.
  TITLE     New classes of mind bomb-interacting proteins identified from yeast
            two-hybrid screens
  JOURNAL   PLoS One 9 (4), e93394 (2014)
   PUBMED   24714733
  REMARK    Publication Status: Online-Only
REFERENCE   6  (bases 1 to 1138)
  AUTHORS   Zheng PP, Severijnen LA, Willemsen R and Kros JM.
  TITLE     Caldesmon is essential for cardiac morphogenesis and function: in
            vivo study using a zebrafish model
  JOURNAL   Biochem Biophys Res Commun 378 (1), 37-40 (2009)
   PUBMED   19000902
  REMARK    GeneRIF: The data provide the first functional assessment of the
            role of caldesmon in cardiac development in vivo, and indicate that
            caldesmon is essential for proper cardiac organogenesis and
            function.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC049014.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC049014.1, EH433171.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2168446, SAMEA2168447
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1138
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /db_xref="taxon:7955"
                     /chromosome="8"
                     /map="8"
     gene            1..1138
                     /gene="bcap31"
                     /gene_synonym="si:bz30i22.4; si:rp71-30i22.4; zgc:56389"
                     /note="B cell receptor associated protein 31"
                     /db_xref="GeneID:368488"
                     /db_xref="ZFIN:ZDB-GENE-030616-63"
     exon            1..88
                     /gene="bcap31"
                     /gene_synonym="si:bz30i22.4; si:rp71-30i22.4; zgc:56389"
                     /inference="alignment:Splign:2.1.0"
     exon            89..197
                     /gene="bcap31"
                     /gene_synonym="si:bz30i22.4; si:rp71-30i22.4; zgc:56389"
                     /inference="alignment:Splign:2.1.0"
     CDS             106..849
                     /gene="bcap31"
                     /gene_synonym="si:bz30i22.4; si:rp71-30i22.4; zgc:56389"
                     /note="accessory protein BAP31"
                     /codon_start=1
                     /product="B-cell receptor-associated protein 31"
                     /protein_id="NP_956386.1"
                     /db_xref="GeneID:368488"
                     /db_xref="ZFIN:ZDB-GENE-030616-63"
                     /translation="

MSLQWTAVATFLYAEVLAVLLLCVPFISPKRWSKFFKSRLVTAITSYGNTAFIVIICILVFLLIDAFREVRKYSVAEKVDLSNNPVAIEHIHMKLFRAQRNEYIAGFALLLCLLLRRLATLLSQQATLMASHEAFQKQAEGANDAAKKYMEENEKLQEKLRQAGIEVPEVGGKAKGGMEEDKKNLKEEVRQLKDELDATKKALQKSDSDVKAMKKQAENLTTEYDRLLEEHARLQAKCDAQQDKKSD"

     misc_feature    106..>426
                     /gene="bcap31"
                     /gene_synonym="si:bz30i22.4; si:rp71-30i22.4; zgc:56389"
                     /note="Bap31/Bap29 transmembrane region; Region: Bap31;
                     pfam05529"
                     /db_xref="CDD:461673"
     misc_feature    <475..>837
                     /gene="bcap31"
                     /gene_synonym="si:bz30i22.4; si:rp71-30i22.4; zgc:56389"
                     /note="Coiled-coil domain-containing protein 158; Region:
                     CCDC158; pfam15921"
                     /db_xref="CDD:464943"
     misc_feature    685..846
                     /gene="bcap31"
                     /gene_synonym="si:bz30i22.4; si:rp71-30i22.4; zgc:56389"
                     /note="Bap31/Bap29 cytoplasmic coiled-coil domain; Region:
                     Bap31_Bap29_C; pfam18035"
                     /db_xref="CDD:465623"
     exon            198..298
                     /gene="bcap31"
                     /gene_synonym="si:bz30i22.4; si:rp71-30i22.4; zgc:56389"
                     /inference="alignment:Splign:2.1.0"
     exon            299..443
                     /gene="bcap31"
                     /gene_synonym="si:bz30i22.4; si:rp71-30i22.4; zgc:56389"
                     /inference="alignment:Splign:2.1.0"
     exon            444..579
                     /gene="bcap31"
                     /gene_synonym="si:bz30i22.4; si:rp71-30i22.4; zgc:56389"
                     /inference="alignment:Splign:2.1.0"
     exon            580..709
                     /gene="bcap31"
                     /gene_synonym="si:bz30i22.4; si:rp71-30i22.4; zgc:56389"
                     /inference="alignment:Splign:2.1.0"
     exon            710..810
                     /gene="bcap31"
                     /gene_synonym="si:bz30i22.4; si:rp71-30i22.4; zgc:56389"
                     /inference="alignment:Splign:2.1.0"
     exon            811..1114
                     /gene="bcap31"
                     /gene_synonym="si:bz30i22.4; si:rp71-30i22.4; zgc:56389"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

agtgtgaagtgcagtcagagtgcaccagaagttttgacagattcctgcaggcctttccgcgaatatttctcatttcacttcaaattaaacttccaggtagccgtcatgagtcttcaatggacggctgtggcgacatttctatatgctgaggtgttagctgtactgctactgtgtgtcccgttcatctccccaaaacgatggagcaaatttttcaagtcccggctggtcactgccattacgagttatggaaacactgcattcattgtcatcatttgtattcttgtctttctgctcatagacgcatttagagaagtgagaaaatacagcgtggcagagaaagtggatctgagcaacaatcctgtggccatcgagcacatccacatgaagctgttcagagcccaaaggaacgaatacatcgctggctttgctctgcttctgtgtttgctgttgagacgtctggccacactgctgtctcagcaggctacactgatggcctctcatgaagccttccaaaagcaggcggagggagcaaatgatgccgccaagaaatacatggaggaaaatgagaaactgcaggagaaactgcggcaagccggtattgaagtgcctgaagtgggtggaaaggccaaaggtggcatggaggaggacaagaaaaatctgaaggaagaggtcaggcagctgaaggacgaactcgacgcaaccaagaaagctcttcagaagtcagacagtgatgtgaaggccatgaaaaagcaggctgagaatctgaccacagagtatgaccgtctgctggaggaacacgccagactgcaggccaaatgtgatgctcaacaggacaagaagtccgactgaacgaagcccttcatgctctgctccctgtcctgcgttctcattggctgtcagcagcgtcgctcttctggctgtgtaagaacagggttccgttcgtcaataatgtgctttcgcttcattcattaaagcctgttgaggcttttcacacactgtatcaagttttctctatatttttgctgtgaacctagggtggttaatttgtgttccctgtgtttagttaaaatttgttttggttttatgttttgattaaataactgttcaaaactgaaaaaaaaaaaaaaaaaaaaaaaaa

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