LOCUS       NM_199961               1675 bp    mRNA    linear   VRT 08-OCT-2023
DEFINITION  Danio rerio claudin domain containing 1a (cldnd1a), mRNA.
ACCESSION   NM_199961
VERSION     NM_199961.1
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 1675)
  AUTHORS   Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I,
            Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y and
            Bobe J.
  TITLE     Gene evolution and gene expression after whole genome duplication
            in fish: the PhyloFish database
  JOURNAL   BMC Genomics 17, 368 (2016)
   PUBMED   27189481
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC060671.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC060671.1, EH995662.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2168446, SAMEA2168447
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1675
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /db_xref="taxon:7955"
                     /chromosome="7"
                     /map="7"
     gene            1..1675
                     /gene="cldnd1a"
                     /gene_synonym="fj30f10; wu:fj30f10; zgc:64190"
                     /note="claudin domain containing 1a"
                     /db_xref="GeneID:335628"
                     /db_xref="ZFIN:ZDB-GENE-030131-7568"
     misc_feature    226..228
                     /gene="cldnd1a"
                     /gene_synonym="fj30f10; wu:fj30f10; zgc:64190"
                     /note="upstream in-frame stop codon"
     CDS             247..1005
                     /gene="cldnd1a"
                     /gene_synonym="fj30f10; wu:fj30f10; zgc:64190"
                     /note="claudin domain-containing protein 1"
                     /codon_start=1
                     /product="claudin domain-containing protein 1a"
                     /protein_id="NP_956255.1"
                     /db_xref="GeneID:335628"
                     /db_xref="ZFIN:ZDB-GENE-030131-7568"
                     /translation="

MVDNRHATALVIAAVLSLLAAVYVSVSIGSPHWYRYCSPPVRAEPNATELRALQEEFLDGDFDEKTASDALFRMNGTVGLWWRCVQTPTDAHWYREPDPQMVMECVSFSLSQQLTPKYREPGNHNSGEDMIRTYLWRCQLLLPLAALLLVLFSALLGFCACVCGSVTPALFIGLLHLLAGLCSLATVCCFLAGTDLLHRVSVLPDRVDAALGWALYLMLMAAPLLMMAAALMVWAARSHGQNYARMTAYRVA"

ORIGIN      

gatcacacacacacacacacacacacacgtgtcgagttcagctcgtagcgctgtgattatttgcagcagtgttcctgtgtgtgtgtgtgatcctgagcgtgagtgtgtgtgtgtgtgttcctccgcagtgacattattctcagactgacagatggcgtgaagcagacgggcggaaagtaggacagcggatccggtgtttacggtgaccgggcgcgcgtgtttacatagtgtgtttatcgcgtcgcgatggtggataaccggcacgccacagcgctggtgatcgccgcggtgctcagcctgctggcggccgtgtatgtgtcggtgtcgatcggttccccgcactggtaccggtactgcagccctccggttcgcgcggagcccaacgccaccgagctgcgcgcgctgcaggaggagtttctggacggagatttcgacgagaaaaccgcgagcgacgcgctgttccgcatgaacgggaccgtcgggctgtggtggcggtgcgtgcagacgcccactgacgcgcactggtaccgggagcccgacccgcagatggtgatggagtgtgtgagcttctccctctctcagcagctcacacccaaatacagagagccgggaaaccacaacagcggagaggacatgatccggacctacctgtggcgctgtcagctcctcctgccgctggctgctctccttctggtcctgttctcggctctgctgggcttctgcgcatgtgtgtgtgggagtgtgacgccggcgctgttcatcgggctgctgcatctgctggcaggtctgtgttctctggccaccgtctgctgtttcctggctgggacagatctgctgcaccgtgtgtcggtgctgccggaccgtgtggacgcggcgctgggctgggcgctgtacctgatgctgatggcggcgccgctgctgatgatggcggcggcactgatggtgtgggcagcgcgcagccacgggcagaactacgctcgcatgacggcgtacagggtcgcttagaggactcacacacacacactcacacacacacacacacacacacacacacacactcacagtcctgctcctgtgtcctggtgtgttctcctcagcgctgcactgatgttctgctgtactgacggtgttctcgccctcctccaccctcacaggactcaatctgctgactcatgctcatgttgactctgaggagggtccacagtgactcaagccccccccccgagtctgtgtgtgttccagtttaagtccccactgggatgtaaaaacaagtatggacagacacaaacagtgtcacttataaaaggatgtgtgtgtttgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctgtagtggtgacgcatgcgcaactttaatttattaactatttattaccatcatctgtatttatctgtgtacagtgaattaacagtgcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgatgtcaattattctggtaatagaggatcaggtgcagtgcattgtgggaaacatcatttattagcatatctgcattttcatacacatgtcgcataatcatcgttgtcatggtaataaactcctcttcctctggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

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