LOCUS       NM_131872               1824 bp    mRNA    linear   VRT 30-JUN-2024
DEFINITION  Danio rerio vimentin (vim), mRNA.
ACCESSION   NM_131872
VERSION     NM_131872.2
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 1824)
  AUTHORS   Aragona,M., Porcino,C., Briglia,M., Mhalhel,K., Abbate,F.,
            Levanti,M., Montalbano,G., Laura,R., Lauriano,E.R., Germana,A. and
            Guerrera,M.C.
  TITLE     Vimentin Localization in the Zebrafish Oral Cavity: A Potential
            Role in Taste Buds Regeneration
  JOURNAL   Int J Mol Sci 24 (21), 15619 (2023)
   PUBMED   37958598
  REMARK    GeneRIF: Vimentin Localization in the Zebrafish Oral Cavity: A
            Potential Role in Taste Buds Regeneration.
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1824)
  AUTHORS   Ulhaq,Z.S., Ogino,Y. and Tse,W.K.F.
  TITLE     Deciphering the pathogenesis of retinopathy associated with
            carnitine palmitoyltransferase I deficiency in zebrafish model
  JOURNAL   Biochem Biophys Res Commun 664, 100-107 (2023)
   PUBMED   37141637
REFERENCE   3  (bases 1 to 1824)
  AUTHORS   Zhang,J., Li,P., Sun,L., Jiang,N., Guo,W., Wang,J., Gao,F., Li,J.,
            Li,H., Zhang,J., Mu,H., Hu,Y. and Cui,X.
  TITLE     Knockout of miR-184 in zebrafish leads to ocular abnormalities by
            elevating p21 levels
  JOURNAL   FASEB J 37 (5), e22927 (2023)
   PUBMED   37086087
REFERENCE   4  (bases 1 to 1824)
  AUTHORS   Ulhaq,Z.S., Ogino,Y. and Tse,W.K.F.
  TITLE     FGF8 rescues motor deficits in zebrafish model of limb-girdle
            muscular dystrophy R18
  JOURNAL   Biochem Biophys Res Commun 652, 76-83 (2023)
   PUBMED   36827861
REFERENCE   5  (bases 1 to 1824)
  AUTHORS   Vocking,O. and Famulski,J.K.
  TITLE     A temporal single cell transcriptome atlas of zebrafish anterior
            segment development
  JOURNAL   Sci Rep 13 (1), 5656 (2023)
   PUBMED   37024546
  REMARK    Publication Status: Online-Only
REFERENCE   6  (bases 1 to 1824)
  AUTHORS   Greiling,T.M., Houck,S.A. and Clark,J.I.
  TITLE     The zebrafish lens proteome during development and aging
  JOURNAL   Mol Vis 15, 2313-2325 (2009)
   PUBMED   19936306
  REMARK    Publication Status: Online-Only
REFERENCE   7  (bases 1 to 1824)
  AUTHORS   Lemeer,S., Jopling,C., Gouw,J., Mohammed,S., Heck,A.J., Slijper,M.
            and den Hertog,J.
  TITLE     Comparative phosphoproteomics of zebrafish Fyn/Yes morpholino
            knockdown embryos
  JOURNAL   Mol Cell Proteomics 7 (11), 2176-2187 (2008)
   PUBMED   18550893
REFERENCE   8  (bases 1 to 1824)
  AUTHORS   Kassen,S.C., Ramanan,V., Montgomery,J.E., T Burket,C., Liu,C.G.,
            Vihtelic,T.S. and Hyde,D.R.
  TITLE     Time course analysis of gene expression during light-induced
            photoreceptor cell death and regeneration in albino zebrafish
  JOURNAL   Dev Neurobiol 67 (8), 1009-1031 (2007)
   PUBMED   17565703
REFERENCE   9  (bases 1 to 1824)
  AUTHORS   Vihtelic,T.S., Fadool,J.M., Gao,J., Thornton,K.A., Hyde,D.R. and
            Wistow,G.
  TITLE     Expressed sequence tag analysis of zebrafish eye tissues for
            NEIBank
  JOURNAL   Mol Vis 11, 1083-1100 (2005)
   PUBMED   16379021
  REMARK    Publication Status: Online-Only
REFERENCE   10 (bases 1 to 1824)
  AUTHORS   Woods,I.G., Wilson,C., Friedlander,B., Chang,P., Reyes,D.K.,
            Nix,R., Kelly,P.D., Chu,F., Postlethwait,J.H. and Talbot,W.S.
  TITLE     The zebrafish gene map defines ancestral vertebrate chromosomes
  JOURNAL   Genome Res 15 (9), 1307-1314 (2005)
   PUBMED   16109975
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC053115.1.
            
            On Dec 20, 2003 this sequence version replaced NM_131872.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC053115.1, GDQQ01014487.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2168446, SAMEA2168447
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1824
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /db_xref="taxon:7955"
                     /chromosome="24"
                     /map="24"
     gene            1..1824
                     /gene="vim"
                     /gene_synonym="cb28"
                     /note="vimentin"
                     /db_xref="GeneID:140599"
                     /db_xref="ZFIN:ZDB-GENE-011212-3"
     exon            1..580
                     /gene="vim"
                     /gene_synonym="cb28"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    33..35
                     /gene="vim"
                     /gene_synonym="cb28"
                     /note="upstream in-frame stop codon"
     CDS             45..1412
                     /gene="vim"
                     /gene_synonym="cb28"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="NP_571947.1"
                     /db_xref="GeneID:140599"
                     /db_xref="ZFIN:ZDB-GENE-011212-3"
                     /translation="

MASRTSTSSYKRMFGGERPAAARSTFSSRQYSSPVRVSSSRTSYNYSSAPPSVYASKGLRVRSGAPLPRLATDTLDFGLAEAINTEFKANRTNEKAEMQHLNDRFASYIDKVRFLEQQNKILIAELEQLRGKGASRVGDLYEDEMRELRRQVDQLTGEKSKVEVDRDNLGEDIERLKERLQEEMLQREDAENSLRSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEELAEMQIQMQEQHLQIDMEVTKPDLTAALKDVRQQYETLASRNLQESEDWYKSKFADLSEAAARNNEAIRLAKQEANDYRRQLQALTCDLEALKGTNESLERQMRELEDSFSMEASGYQDTIGRLEDDIRNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRITSPFPNFSSLSLRESMKETRPLIDNLSKKVVIKTIETRDGHIINESTQNEDLE"

     misc_feature    57..320
                     /gene="vim"
                     /gene_synonym="cb28"
                     /note="Intermediate filament head (DNA binding) region;
                     Region: Filament_head; pfam04732"
                     /db_xref="CDD:461414"
     misc_feature    321..1247
                     /gene="vim"
                     /gene_synonym="cb28"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:459643"
     exon            581..641
                     /gene="vim"
                     /gene_synonym="cb28"
                     /inference="alignment:Splign:2.1.0"
     exon            642..737
                     /gene="vim"
                     /gene_synonym="cb28"
                     /inference="alignment:Splign:2.1.0"
     exon            738..899
                     /gene="vim"
                     /gene_synonym="cb28"
                     /inference="alignment:Splign:2.1.0"
     exon            900..1025
                     /gene="vim"
                     /gene_synonym="cb28"
                     /inference="alignment:Splign:2.1.0"
     exon            1026..1246
                     /gene="vim"
                     /gene_synonym="cb28"
                     /inference="alignment:Splign:2.1.0"
     exon            1247..1290
                     /gene="vim"
                     /gene_synonym="cb28"
                     /inference="alignment:Splign:2.1.0"
     exon            1291..1373
                     /gene="vim"
                     /gene_synonym="cb28"
                     /inference="alignment:Splign:2.1.0"
     exon            1374..1797
                     /gene="vim"
                     /gene_synonym="cb28"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

cgacatttagacttcaacaataacccgcaaactaaaggattaccatggccagtcgaacaagcacatcttcctataaaaggatgttcggcggggagcgtcccgcggcggcgcggtccactttctccagccggcagtacagcagcccagtgcgcgtctcctcctcgcgcacgtcctacaactacagcagcgcgcctccatccgtgtacgcgagtaaaggcttgagagtgcgctccggcgcgccccttcccagactcgccaccgacactctggatttcgggcttgccgaggccataaacaccgagtttaaagccaaccggaccaatgagaaagcggagatgcagcacctcaacgaccggttcgccagttacatagacaaagtgcgctttctggagcagcagaacaagatcctgatcgcggagctggagcagctgcggggcaaaggagcgtcccgggtcggagatctgtacgaggatgagatgcgggagctgcggagacaggtggatcagctgaccggggaaaagagcaaagtggaggtggaccgggacaacctaggggaggacatcgagcgcctcaaggagagacttcaagaagagatgcttcaaagagaagatgctgagaacagcctccgcagcttcagacaggatgttgataacgcctctctggctcgtctggacctggagagaaaggtggagtccctgcaagaagagattgctttcttgaagaagcttcacgatgaggaacttgctgagatgcagatccagatgcaggagcagcatttgcagatcgatatggaagtgaccaaacctgacctgaccgctgctctgaaagacgtccggcagcagtacgagactctggcctccagaaacctgcaggagtctgaggattggtacaaatccaagtttgctgacctgtcagaagctgctgcccgaaacaatgaagccatccgtctggccaaacaggaggccaatgattaccgtcgccagctccaggctctcacttgtgacttggaagctctcaaaggaacgaatgagtctctggagcgtcagatgagagaactagaggacagcttctccatggaggcgtctggttatcaggacaccatcggccgtctggaggacgacattcgcaacatgaaggatgagatggcacgtcatctgcgggaataccaggatctgctcaatgttaaaatggccctggatattgagatcgccacctacaggaaactgctagaaggagaagaaagcaggatcacctcaccatttcccaacttttcatcattaagcctgcgagagtccatgaaggaaaccagacctctgattgacaacctgtcaaaaaaagtggtgattaagaccatcgagaccagagacggacatataattaacgagtccacccaaaacgaggatctggaatgagctgcatgtgaacccgaggcactgaagatccacgctggagtaaattgagaagaatgaagtttcctctgttgtttctgttgagagtaaaagaaaagaaaagaaaaacagctttaaagtgccttctttgcattgccacattagagcggtctgttattagagctgaaggctgaaagtgtaggccactgagtaaaccagctttatcctgggtttatgtttaccacaatgtctgtagtttacactgtcgaagaccacagcaatactgcttcaactttttctgttttgtatgattttcacaaacgaccaaaaacgtgatgagcttgcgtcttctgcaccattagaccaaacaacaaactgacacaaattcaataaaccttttgaaaaataaaaaaaaaaaaaaaaaaaaaaaaaaaaa

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