LOCUS       NM_131771                935 bp    mRNA    linear   VRT 28-APR-2024
DEFINITION  Danio rerio claudin 15-like a (cldn15la), mRNA.
ACCESSION   NM_131771 XM_694295
VERSION     NM_131771.2
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 935)
  AUTHORS   Liao,X., Lan,Y., Wang,W., Zhang,J., Shao,R., Yin,Z.,
            Gudmundsson,G.H., Bergman,P., Mai,K., Ai,Q. and Wan,M.
  TITLE     Vitamin D influences gut microbiota and acetate production in
            zebrafish (Danio rerio) to promote intestinal immunity against
            invading pathogens
  JOURNAL   Gut Microbes 15 (1), 2187575 (2023)
   PUBMED   36879441
REFERENCE   2  (bases 1 to 935)
  AUTHORS   Morales,R.A., Rabahi,S., Diaz,O.E., Salloum,Y., Kern,B.C.,
            Westling,M., Luo,X., Parigi,S.M., Monasterio,G., Das,S.,
            Hernandez,P.P. and Villablanca,E.J.
  TITLE     Interleukin-10 regulates goblet cell numbers through Notch
            signaling in the developing zebrafish intestine
  JOURNAL   Mucosal Immunol 15 (5), 940-951 (2022)
   PUBMED   35840681
REFERENCE   3  (bases 1 to 935)
  AUTHORS   Levic,D.S., Yamaguchi,N., Wang,S., Knaut,H. and Bagnat,M.
  TITLE     Knock-in tagging in zebrafish facilitated by insertion into
            non-coding regions
  JOURNAL   Development 148 (19) (2021)
   PUBMED   34495314
REFERENCE   4  (bases 1 to 935)
  AUTHORS   Hachimi,M., Grabowski,C., Campanario,S., Herranz,G., Baonza,G.,
            Serrador,J.M., Gomez-Lopez,S., Barea,M.D., Bosch-Fortea,M.,
            Gilmour,D., Bagnat,M., Rodriguez-Fraticelli,A.E. and
            Martin-Belmonte,F.
  TITLE     Smoothelin-like 2 Inhibits Coronin-1B to Stabilize the Apical Actin
            Cortex during Epithelial Morphogenesis
  JOURNAL   Curr Biol 31 (4), 696-706 (2021)
   PUBMED   33275893
REFERENCE   5  (bases 1 to 935)
  AUTHORS   Park,J., Levic,D.S., Sumigray,K.D., Bagwell,J., Eroglu,O.,
            Block,C.L., Eroglu,C., Barry,R., Lickwar,C.R., Rawls,J.F.,
            Watts,S.A., Lechler,T. and Bagnat,M.
  TITLE     Lysosome-Rich Enterocytes Mediate Protein Absorption in the
            Vertebrate Gut
  JOURNAL   Dev Cell 51 (1), 7-20 (2019)
   PUBMED   31474562
REFERENCE   6  (bases 1 to 935)
  AUTHORS   Elkon,R., Milon,B., Morrison,L., Shah,M., Vijayakumar,S.,
            Racherla,M., Leitch,C.C., Silipino,L., Hadi,S., Weiss-Gayet,M.,
            Barras,E., Schmid,C.D., Ait-Lounis,A., Barnes,A., Song,Y.,
            Eisenman,D.J., Eliyahu,E., Frolenkov,G.I., Strome,S.E., Durand,B.,
            Zaghloul,N.A., Jones,S.M., Reith,W. and Hertzano,R.
  TITLE     RFX transcription factors are essential for hearing in mice
  JOURNAL   Nat Commun 6, 8549 (2015)
   PUBMED   26469318
  REMARK    Publication Status: Online-Only
REFERENCE   7  (bases 1 to 935)
  AUTHORS   Alvers,A.L., Ryan,S., Scherz,P.J., Huisken,J. and Bagnat,M.
  TITLE     Single continuous lumen formation in the zebrafish gut is mediated
            by smoothened-dependent tissue remodeling
  JOURNAL   Development 141 (5), 1110-1119 (2014)
   PUBMED   24504339
REFERENCE   8  (bases 1 to 935)
  AUTHORS   Baltzegar,D.A., Reading,B.J., Brune,E.S. and Borski,R.J.
  TITLE     Phylogenetic revision of the claudin gene family
  JOURNAL   Mar Genomics 11, 17-26 (2013)
   PUBMED   23726886
REFERENCE   9  (bases 1 to 935)
  AUTHORS   Clelland,E.S. and Kelly,S.P.
  TITLE     Tight junction proteins in zebrafish ovarian follicles: stage
            specific mRNA abundance and response to 17beta-estradiol, human
            chorionic gonadotropin, and maturation inducing hormone
  JOURNAL   Gen Comp Endocrinol 168 (3), 388-400 (2010)
   PUBMED   20553723
REFERENCE   10 (bases 1 to 935)
  AUTHORS   Lin,B., Chen,S., Cao,Z., Lin,Y., Mo,D., Zhang,H., Gu,J., Dong,M.,
            Liu,Z. and Xu,A.
  TITLE     Acute phase response in zebrafish upon Aeromonas salmonicida and
            Staphylococcus aureus infection: striking similarities and obvious
            differences with mammals
  JOURNAL   Mol Immunol 44 (4), 295-301 (2007)
   PUBMED   16630661
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            EH495796.1, EH507578.1 and EH533727.1.
            
            On Apr 4, 2014 this sequence version replaced NM_131771.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: EH495796.1, AF359427.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA4476743, SAMEA4476744
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-169               EH495796.1         32-200
            170-875             EH507578.1         179-884
            876-935             EH533727.1         2-61                c
FEATURES             Location/Qualifiers
     source          1..935
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="Tuebingen"
                     /db_xref="taxon:7955"
                     /chromosome="2"
                     /map="2"
     gene            1..935
                     /gene="cldn15la"
                     /gene_synonym="cldn10; cldn10l; cldn10l1a"
                     /note="claudin 15-like a"
                     /db_xref="GeneID:81591"
                     /db_xref="ZFIN:ZDB-GENE-010328-12"
     exon            1..314
                     /gene="cldn15la"
                     /gene_synonym="cldn10; cldn10l; cldn10l1a"
                     /inference="alignment:Splign:2.1.0"
     CDS             98..757
                     /gene="cldn15la"
                     /gene_synonym="cldn10; cldn10l; cldn10l1a"
                     /note="claudin 10 like; claudin 10-like 1a"
                     /codon_start=1
                     /product="claudin 15-like a"
                     /protein_id="NP_571846.2"
                     /db_xref="GeneID:81591"
                     /db_xref="ZFIN:ZDB-GENE-010328-12"
                     /translation="

MSTALEVTGYFMCLIGWVLTGLAVANDYWKISSIQGNVIVSNRLYENLWHACGEDSTGKANCQDFQSMLALPVHIQACRALVIIALLLGLVGLVLSTMGLNCIKIGSKTDESKGKNMFIGGIIYLIGGLCTMVGVSWYAARVVQEFNDPFYGGVRFELGSGLYIGWAGAALCMLGGGFQCSAYQRFSKSKEKGAYYPAGKPQTIYTTAQSNAETSKAYV"

     misc_feature    104..631
                     /gene="cldn15la"
                     /gene_synonym="cldn10; cldn10l; cldn10l1a"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:473919"
     exon            315..479
                     /gene="cldn15la"
                     /gene_synonym="cldn10; cldn10l; cldn10l1a"
                     /inference="alignment:Splign:2.1.0"
     exon            480..561
                     /gene="cldn15la"
                     /gene_synonym="cldn10; cldn10l; cldn10l1a"
                     /inference="alignment:Splign:2.1.0"
     exon            562..675
                     /gene="cldn15la"
                     /gene_synonym="cldn10; cldn10l; cldn10l1a"
                     /inference="alignment:Splign:2.1.0"
     exon            676..935
                     /gene="cldn15la"
                     /gene_synonym="cldn10; cldn10l; cldn10l1a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

agctcaacagaagagcaatccaaacccatcgatcaggagcaagaacaggacacctatacagattcttcccttgaattttggatttctgaggttgaaaatgtctacagcattagaggtgacgggatacttcatgtgtttgatcggctgggttcttactggcctcgctgtggcaaatgattactggaagatttctagtattcaaggcaatgtgattgtttccaatcgcctctatgagaacttgtggcacgcttgtggagaggacagcactggaaaagccaactgtcaagactttcaatccatgctagctttgccagttcacattcaggcttgccgggcgttagtgatcattgccctgctcctggggctggttggtttagttttatctacaatggggctgaactgcattaagattggctcaaaaacagatgaatcaaaaggcaagaatatgttcatcggtggcattatctacctgataggaggtctttgcactatggtgggtgtatcttggtacgctgcacgtgttgtgcaagaattcaatgacccattctatgggggtgtcaggtttgagctgggctccgggctctacatcggctgggctggagcagcgctatgcatgttgggtggtggtttccagtgcagtgcctatcaaaggttctccaaatcaaaagaaaaaggggcatactacccagctggtaaaccacagaccatctataccacagctcaatcgaacgcagaaacatccaaagcctacgtctaagatttcccattttaacaaggctgaactgttgttacgttgatgtttgtttaactccattatgtttttgctacttttttcagttagttaggactatgttgtgttcaccataattgtaaaaagtaaatcaattttcatggatgcggcacgtgctgaataaaatatgccctctgattcaata

//