LOCUS       NM_001386636            1098 bp    mRNA    linear   VRT 02-JUL-2023
DEFINITION  Danio rerio NELL2 interacting cell ontogeny regulator 1 (nicol1),
            mRNA.
ACCESSION   NM_001386636 XM_021471898 XM_690005
VERSION     NM_001386636.1
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 1098)
  AUTHORS   Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M,
            Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD,
            Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov
            GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W and
            Hertzano R.
  TITLE     RFX transcription factors are essential for hearing in mice
  JOURNAL   Nat Commun 6, 8549 (2015)
   PUBMED   26469318
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1098)
  AUTHORS   Aoki M, Segawa H, Naito M and Okamoto H.
  TITLE     Identification of possible downstream genes required for the
            extension of peripheral axons in primary sensory neurons
  JOURNAL   Biochem Biophys Res Commun 445 (2), 357-362 (2014)
   PUBMED   24513284
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CR318672.5.
            
            On or before Aug 28, 2020 this sequence version replaced
            XM_021471898.1, XM_690005.5.
            
            ##Evidence-Data-START##
            Transcript exon combination :: GDQQ01002075.1, EH556775.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2168448, SAMEA3505383
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-128               CR318672.5         100853-100980
            129-251             CR318672.5         101252-101374
            252-340             CR318672.5         102781-102869
            341-1098            CR318672.5         105750-106507
FEATURES             Location/Qualifiers
     source          1..1098
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="Tuebingen"
                     /db_xref="taxon:7955"
                     /chromosome="7"
                     /map="7"
     gene            1..1098
                     /gene="nicol1"
                     /gene_synonym="fj40g07; si:dkeyp-75h12.5; wu:fj40g07"
                     /note="NELL2 interacting cell ontogeny regulator 1"
                     /db_xref="GeneID:566718"
                     /db_xref="ZFIN:ZDB-GENE-030131-7914"
     exon            1..128
                     /gene="nicol1"
                     /gene_synonym="fj40g07; si:dkeyp-75h12.5; wu:fj40g07"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    95..97
                     /gene="nicol1"
                     /gene_synonym="fj40g07; si:dkeyp-75h12.5; wu:fj40g07"
                     /note="upstream in-frame stop codon"
     exon            129..251
                     /gene="nicol1"
                     /gene_synonym="fj40g07; si:dkeyp-75h12.5; wu:fj40g07"
                     /inference="alignment:Splign:2.1.0"
     CDS             155..412
                     /gene="nicol1"
                     /gene_synonym="fj40g07; si:dkeyp-75h12.5; wu:fj40g07"
                     /codon_start=1
                     /product="neuropeptide-like protein C4orf48 precursor"
                     /protein_id="NP_001373565.1"
                     /db_xref="GeneID:566718"
                     /db_xref="ZFIN:ZDB-GENE-030131-7914"
                     /translation="

MRPSGALAAAAVMLMLLVCCQAEDSGSVIPAESRPCVDCHAFEFMQRALQDLKKTAFNLDSRTENLVLRAEKRALCDCMPASSLR"

     sig_peptide     155..220
                     /gene="nicol1"
                     /gene_synonym="fj40g07; si:dkeyp-75h12.5; wu:fj40g07"
                     /inference="COORDINATES: ab initio prediction:SignalP:4.0"
     misc_feature    215..397
                     /gene="nicol1"
                     /gene_synonym="fj40g07; si:dkeyp-75h12.5; wu:fj40g07"
                     /note="Neuropeptide-like; Region: Neuropep_like;
                     pfam15161"
                     /db_xref="CDD:317565"
     exon            252..340
                     /gene="nicol1"
                     /gene_synonym="fj40g07; si:dkeyp-75h12.5; wu:fj40g07"
                     /inference="alignment:Splign:2.1.0"
     exon            341..1098
                     /gene="nicol1"
                     /gene_synonym="fj40g07; si:dkeyp-75h12.5; wu:fj40g07"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

atcctacggcgcaccgcgaaggacaataatcataaaaacgcgattgacgctccgcaacgaaactgcgtcctgtgaaggagggcggtggtttgactaacggtgccagtgtcttcatcagaaaactacaggtttattgtgtgtgtgcggcgacagtatgaggccaagcggagctctggcggcggcggcggtgatgctgatgctgctcgtgtgttgccaagccgaggactcaggctcggtcatcccggccgagagccggccatgtgttgactgtcatgccttcgagttcatgcagagagccttgcaagacctgaagaaaacagccttcaacttagactcacggacggagaatttggtgctgagggccgagaagagggcgttgtgtgactgcatgcctgccagcagcctgcgctaaaaagccagcgtaaacactgtcctcagatacagaaacctttatgtacctaaaggatactacctgctcttagtcaaacacactccgttgctctcaaacacgcttcctgtcatgtgtgacaagaaacatgttttatctttcatcataatatgtgcataaacacacattcctgacagaagtcaacacacaacattccactgttgaaacgtcgatgctgagaggcacattcatgatagggcagcagcaaatacattgtatcttccatataagtgaatataaacacaggggaatataaacacctctccaggcacaatgcactgcaaaagattctgcaaacacattatttattatcattatttgcacagtagactagatgtttttcttttttaaatactaacggctttttatatttttgttcttaggatatatgattattagtcacaatggttaagcagatatttagatctattaaatatatcaatggcgttgtttgctgtaagattggtagatctacgactagaagagagtctgcatgtaaagtgatagtttagagttttatatgaggatttatgagaagggaaatgaaggaatggttcatagagattactttggtactaagatgtgagttcacagctgtaacaatgtctttttgtgtgtagaaaagtgcattaaaaacatatgtgacgtca

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