LOCUS       NM_001128201            9660 bp    mRNA    linear   VRT 27-JAN-2019
DEFINITION  Danio rerio microtubule-associated protein 1B (map1b), mRNA.
ACCESSION   NM_001128201
VERSION     NM_001128201.2
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 9660)
  AUTHORS   Bayes A, Collins MO, Reig-Viader R, Gou G, Goulding D, Izquierdo A,
            Choudhary JS, Emes RD and Grant SG.
  TITLE     Evolution of complexity in the zebrafish synapse proteome
  JOURNAL   Nat Commun 8, 14613 (2017)
   PUBMED   28252024
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9660)
  AUTHORS   Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I,
            Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y and
            Bobe J.
  TITLE     Gene evolution and gene expression after whole genome duplication
            in fish: the PhyloFish database
  JOURNAL   BMC Genomics 17, 368 (2016)
   PUBMED   27189481
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 9660)
  AUTHORS   Jayachandran P, Olmo VN, Sanchez SP, McFarland RJ, Vital E, Werner
            JM, Hong E, Sanchez-Alberola N, Molodstov A and Brewster RM.
  TITLE     Microtubule-associated protein 1b is required for shaping the
            neural tube
  JOURNAL   Neural Dev 11, 1 (2016)
   PUBMED   26782621
  REMARK    GeneRIF: These data highlight the importance of microtubules in the
            early morphogenetic movements that shape the neural tube and reveal
            a novel role for the MT regulator Map1b in mediating cell
            elongation and polarized cell movement in neural progenitor cells.
            Publication Status: Online-Only
REFERENCE   4  (bases 1 to 9660)
  AUTHORS   Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M,
            Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD,
            Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov
            GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W and
            Hertzano R.
  TITLE     RFX transcription factors are essential for hearing in mice
  JOURNAL   Nat Commun 6, 8549 (2015)
   PUBMED   26469318
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 9660)
  AUTHORS   Dow E, Siletti K and Hudspeth AJ.
  TITLE     Cellular projections from sensory hair cells form polarity-specific
            scaffolds during synaptogenesis
  JOURNAL   Genes Dev. 29 (10), 1087-1094 (2015)
   PUBMED   25995190
REFERENCE   6  (bases 1 to 9660)
  AUTHORS   Aoki M, Segawa H, Naito M and Okamoto H.
  TITLE     Identification of possible downstream genes required for the
            extension of peripheral axons in primary sensory neurons
  JOURNAL   Biochem. Biophys. Res. Commun. 445 (2), 357-362 (2014)
   PUBMED   24513284
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CR751565.6, EH445754.1, EH471633.1 and EB942800.1.
            
            On Oct 24, 2015 this sequence version replaced NM_001128201.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data because no single transcript from the same
            strain was available for the full length of the gene. The extent of
            this transcript is supported by transcript alignments and
            orthologous data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB370231.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2168446, SAMEA2168447
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-7                 CR751565.6         1234-1240
            8-841               EH445754.1         15-848
            842-1010            CR751565.6         22758-22926
            1011-1817           EH471633.1         1-807               c
            1818-5795           CR751565.6         23734-27711
            5796-6028           CR751565.6         27834-28066
            6029-9152           CR751565.6         28561-31684
            9153-9660           EB942800.1         1-508
FEATURES             Location/Qualifiers
     source          1..9660
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="Tuebingen"
                     /db_xref="taxon:7955"
                     /chromosome="5"
                     /map="5"
     gene            1..9660
                     /gene="map1b"
                     /note="microtubule-associated protein 1B"
                     /db_xref="GeneID:559032"
                     /db_xref="ZFIN:ZDB-GENE-130530-690"
     exon            1..269
                     /gene="map1b"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    74..76
                     /gene="map1b"
                     /note="upstream in-frame stop codon"
     CDS             83..6184
                     /gene="map1b"
                     /note="zmp:0000000687"
                     /codon_start=1
                     /product="microtubule-associated protein 1B"
                     /protein_id="NP_001121673.1"
                     /db_xref="GeneID:559032"
                     /db_xref="ZFIN:ZDB-GENE-130530-690"
                     /translation="

MATLVDTAETPAPFGGVGSLRSTASPTASTQHFDEGKYYLLVVIGELVTDEHLKCAIADIEKGIRSWDTNLIDCNLDQELKLFVSRHSARFSADVRGQKILHHKSNVLETVVLINPSDEAVSTEVRLMVSDTAHHKLLVLAGQCFENTGELILQSGSFSLSSFIDIFTDQEIGELLSTVHPANKASLTLFCPEHGDWKNSNLDKHNLQDFIYMKLNSPTILPEMEGLSEFTEYLSESVEISSPFDMLEPPTSGGFLKLSKPCCYIFPGGRGDSALFAVNGFNMLINGGSDRKSCFWKLVRHLDRVDSVLLTHIGDDNLPGINSMLQRKIAELEEEQSQGSTANSDWTKNMISPDIGVMFANMPQNLENLEPNYRIRRNAEEAAFTLQYLNKLSLKPEPLHRSIGNTVEPIILFQKMGVGKLEMYVLNPAKNSKELQFFLKEWSGSDKDKATILLPNGKESELPVSYLSSISSLIVWHPANPSEKIVRVLFPGNSTQNHILEGLEKLKHLDFLKYPVITQNELNLNLAPTLKQAKMKHKTDSKESLKSTSKPSPTKNLHKESREETTEKLKTVSKTEPAEKQEPTQKIEKKEKTLVKKVKAGEKDIKSKVEQTHKTDTPEKKKVEIKPKTIKKESKKSVEKTETVKTEKNVPKKEDKVKKEDKVKKEEVKKEIKRRDVRKDSLLKESRKDEKKESLKDSKEPMKDLRKTGSLKKNAPSTPDVKKPAPKPKVAARGKSPGSPARSKDKAKSKPTKKDAGESVAAPSVSGATVEEPTVEDSATDVLEAERSLMSSPEDLTKDFEALKAEEMAEDDEVLSQTKIDDSNQEEVIRHEEITHCKESPEAAESLDEGIATTEAEEECGGTPGELEPNQKSNGTSEKFEDEGTGLEESSELGDYEEKGETEEVDEQDRAISTLKDEQAELETKEGANYGTDEPEYLDKETKLQCFDVTTPPKLTAPLSPADSVHDETLPAGSESEAASDDENRDEPPEEYTTSGHTQSTIEISSVPTPMDEMSTPRDVMSDETTNDESDSPSQDFVRYGITTEHERKKLSPLQDVPELDHSKSDATEGHDYHVSASTISPPSSLEEDKSVKDFSVKDTFSFDSSRLTTTTNLPFVRSPSVDQNVNIDLVHAGVSSPIELGTTLAGISKGLESYSPDEKTLEGPLSPQSSGHTPFYQSPVEEKAGTLPSEKTSEAQGPVIVDITSDKEYSPREASPIDEAVPVSQPGKKQSPIYEAHLSTNFEFDSKLPSQTDNSDKKIATDDNSSVISATSLPPSKIESLSETKHFTTFKEDSKMSISEGTTSDKSGTPVDEVVADDTFSHIASASTASLATSSLPEPTTDDVSPSLHAEVGSPHSTEVDDSFSVSVVQTPTTMQEAEVSPSKEDSPRPMSISPDVSPKTAKLRMPEQETKSPEKLSAGCEQESPEHSFALDFSKQSPDHPSVGGMQSTATENGPTEVDDSPLDEVGSMGEQHRPGEAGDKAMFFKDSDSTQAASASPSDASQSTPSVTTPCQIAEPREVSPDLDNLSESVTPKQSPSKQSPLSLDSSLVLGRPSISHEEVNKGKLSPNSFYEESAMDKSEDTQNLERTPPKASSPLSPTESLCFSQKTEELKLGSETTTFTGSKSPTSPKMSPPAQLSPSSTQTDTLDKFSTSSSSYSYSCQNVESTQICDGGSIGPETSKACHSQSRAEVDLCLVTSCEYRHPKTELSPSFINPSPLEYFMTEEPNLGEEKPLAKSGEGPPPPEEKQQTKQCEETPPTSVSESAPSQTDSDVPPGTEECPSITADANIDSEDDSETLPTDRTITYRHADPPPVTPRDPAPTPPHPDACMVDPEVLKAEEASGKPKKNISSKTKPSATKSLSKTSAIKESKVSSPKKSTEDKDAKNATNTSASRGVKNSTSGSTKSSGGTSVPNCPTMYMDLVYIPNHCNAKNVDAEFFKRIRSSYYVVSGNDPTAQEPSKAVLDALLEGKSQWGNNMQVTLIPTHDTEVMREWYQETHEKQQDLNIMVLASSSTVVMQDESFPACKIEL"

     misc_feature    <1637..>2917
                     /gene="map1b"
                     /note="MAEBL; Provisional; Region: PTZ00121"
                     /db_xref="CDD:173412"
     misc_feature    <3497..>3898
                     /gene="map1b"
                     /note="DNA polymerase III subunits gamma and tau;
                     Provisional; Region: PRK14954"
                     /db_xref="CDD:184918"
     misc_feature    <4055..5596
                     /gene="map1b"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    4808..>5569
                     /gene="map1b"
                     /note="Atrophin-1 family; Region: Atrophin-1; pfam03154"
                     /db_xref="CDD:460830"
     exon            270..371
                     /gene="map1b"
                     /inference="alignment:Splign:2.1.0"
     exon            372..454
                     /gene="map1b"
                     /inference="alignment:Splign:2.1.0"
     exon            455..595
                     /gene="map1b"
                     /inference="alignment:Splign:2.1.0"
     exon            596..5795
                     /gene="map1b"
                     /inference="alignment:Splign:2.1.0"
     exon            5796..6028
                     /gene="map1b"
                     /inference="alignment:Splign:2.1.0"
     exon            6029..9647
                     /gene="map1b"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

acagagcagctcacttcagctcgccggacaccgagtgacagagtgtgtgtgagactgaaatatagagcgtgtctgagagagaatggcgacgctggttgatactgcggaaactccagcgcccttcggcggagtcggcagcctcaggagcacggcatcacccacagcctcgacacagcacttcgacgagggcaaatattacctgctggtggtcattggggagctggtcactgacgagcatctcaagtgtgccattgcggacattgagaaaggaatccgttcatgggacacaaatctcatcgattgtaacttggaccaggagctgaagctttttgtttctcgacactctgccaggttttcagccgatgtgagagggcaaaagattctgcaccacaaaagtaatgtgttggagacagtggtgctcattaacccttcagatgaagctgttagcactgaggtacggctaatggtctcagacacagcccatcataagctgcttgtcctggcaggacagtgctttgaaaatacaggcgagctgattcttcaatcaggctccttttctctctccagtttcattgacatttttacagatcaagagattggagagcttcttagcaccgtacatccagccaacaaagccagtttaacccttttttgtcctgagcatggtgactggaaaaattcaaacctggacaaacacaacttacaggatttcatctacatgaagctaaactccccaaccatccttccagaaatggaaggtctttctgaatttacagaatatctgtcagaatctgtagaaatctcatccccatttgacatgctggagcccccaacctcaggggggtttctaaaattatcaaaaccatgctgctatatattccctggtggacggggtgactctgcattgtttgcagttaatggtttcaacatgctaattaatggtggatctgatagaaagtcatgcttttggaagctggtacgacatttggacagagtagattctgttctccttacacacattggagatgataaccttccaggtatcaatagtatgctacagcgcaaaatagctgaactagaagaggagcagtcacaggggtctacagctaacagtgactggacaaagaatatgatctcacctgatattggtgttatgtttgccaacatgcctcagaacctggaaaatcttgaacccaactacagaattagaagaaatgcagaggaggcagccttcacactgcagtacttaaacaagttgtctctaaaacctgaacctctgcataggagtataggtaatacagtagaaccaattatactattccagaaaatgggggtcggaaagcttgaaatgtatgttcttaacccagctaagaacagtaaggagttgcagttttttctgaaagaatggtctggtagtgataaagacaaagcgaccatcttgttaccaaatggaaaagaatcagaactccccgtgtcatatttgtcctctatctcatcgctgattgtgtggcatcctgctaacccatcagaaaagattgtccgcgtcctttttccaggcaattctactcagaatcatattctagaaggcctagaaaaacttaaacacttagacttcctcaaatatcctgtgatcacacaaaatgagctcaatttaaacttagccccgacactgaaacaagcaaagatgaaacataagacagacagtaaagagagtctcaagtccacatcaaaaccatcccctaccaaaaatctccacaaagaatccagggaagaaaccactgaaaaactaaaaactgtaagtaaaactgaaccagcagaaaaacaggagccaacacaaaaaatagagaaaaaggaaaaaacacttgtgaaaaaagtgaaagcaggggaaaaggacattaaaagcaaggttgagcaaacacacaaaactgacactccagagaaaaagaaagttgaaattaaaccaaaaactataaagaaggaatccaaaaaatctgtggaaaagactgagactgttaaaactgaaaaaaacgtacccaagaaagaagacaaggttaaaaaagaagacaaggtaaagaaagaagaagtgaaaaaagaaattaaaagacgagacgtcaggaaagactccctattaaaggagagcagaaaggatgaaaagaaagaatccctaaaagattcaaaagagccaatgaaagatttaaggaaaactggtagcttgaaaaagaatgcccctagcacacctgatgtgaaaaaacctgcacctaaaccaaaggttgcagcacgtgggaagagccctggtagccctgccagatctaaagacaaggccaagtccaagcccaccaaaaaagatgcaggagaatcagtggcagcaccttccgtctcaggagccacggttgaagagcccaccgtggaagacagtgcaacagatgtacttgaggcagagagatcacttatgtcttctccagaggacctcactaaagattttgaggctttgaaagcagaagagatggctgaagatgatgaggtcctttctcagaccaaaatagacgattctaatcaagaagaagtgattagacatgaagaaataactcattgcaaagagtctccagaagcagcagagtccctggatgaaggaatagcaaccactgaagctgaggaggaatgtggaggtactccaggggaactagaacccaatcagaaaagcaacggtaccagtgaaaagtttgaagatgaagggacagggttggaagagtcctctgagttaggggactatgaagaaaagggagagacagaggaagtggatgagcaggacagagcaatatctacattaaaagatgaacaggcagagcttgaaaccaaggaaggggcaaattatggtaccgatgaaccagaatatcttgacaaagaaacaaagttgcaatgttttgatgtaaccacaccaccaaagctcactgcacctttgtctcctgctgattcagttcatgatgaaaccctacctgcaggttcagaaagtgaggctgcctctgatgatgaaaaccgagatgagcctccagaagaatacacaacatctggacacactcagtctacgattgagatctcaagtgtcccaacgcctatggatgaaatgtcaactccaagagatgtaatgagtgatgagacaactaatgatgaaagcgattctccttcccaagattttgtcaggtacggtataactacagaacatgaacgaaagaaactttcacctcttcaagatgttcctgaattagaccactccaagagtgatgccactgagggccatgattatcatgtgtcagcttccaccatttcaccaccatcttcattggaggaagataaatctgtcaaggatttttcagttaaagacacattctcttttgattcaagcaggctcactactactacaaatttgccttttgtcaggtcaccttctgttgaccaaaatgtaaacattgaccttgtgcatgcaggtgtatcttcacctattgaactgggaaccacactagcaggtatatcaaaaggtctggaatcatacagtccagatgagaagaccttagagggccctttatctcctcaatcctcaggacacacacctttctaccagtcgccggttgaggagaaagctggcactctaccatctgagaaaacatctgaggcccagggtcctgttattgttgacatcacaagtgacaaggaatactctcccagagaggctagtcctattgatgaagcagtgcctgtttcacaaccaggaaagaaacaatcaccaatttatgaagcacacttatcgaccaattttgaatttgacagcaaattgccaagtcaaactgacaatagtgataaaaaaatagcaactgatgacaattcatcagtaatatctgccacatcattgccaccatccaaaatagaaagtctgtctgaaacaaagcatttcacaacatttaaagaggacagtaaaatgtccatatctgaagggacaacatctgataagtctggcactccagttgatgaagttgttgcagacgacacattttctcacattgcctctgcatcaacagcctcacttgcaacaagttctttaccggaaccgacaacagatgatgtctctccatcacttcatgctgaagtgggctcccctcattccacagaagtggatgattctttttctgtctcagttgttcagactccaaccacgatgcaggaagcagaagtctctccatctaaggaggacagtccccgtcctatgtcaatctctcccgatgtttcaccaaagacagctaaactaagaatgccagaacaagaaacaaaatcccctgagaagttgtcagctgggtgtgaacaagaatccccagaacactcatttgcattggatttcagcaaacaatcacctgatcatccatcagtaggaggaatgcagtctacagccactgagaatggtcccacagaagttgatgatagtcccttggatgaagttggttccatgggagaacaacacagacctggggaagctggggataaggcaatgttttttaaagattctgatagtacccaggctgcttctgcctccccatcagatgcatctcagtctaccccatcagttacaacaccctgccaaattgcagagccaagagaagtttctccagatctagataatttatcagagtcagtcactccaaaacagtcacctagcaaacagtctcctttgtctcttgactcatcccttgttttaggcagaccaagtatctctcatgaagaagtaaacaaaggtaaacttagtcccaattcattttatgaagagagtgctatggataaatcagaggacacacaaaatctagagaggactcctccaaaggctagttcacccttatctcctactgaatcattgtgtttttctcaaaagacagaagagcttaaacttggctcagaaactactaccttcacaggttcaaaatcccccaccagccccaaaatgtcacctccagcccaac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