2024-11-01 12:39:43, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS NM_001114909 1268 bp mRNA linear VRT 08-APR-2023 DEFINITION Danio rerio acetylserotonin O-methyltransferase (asmt), mRNA. ACCESSION NM_001114909 VERSION NM_001114909.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE 1 (bases 1 to 1268) AUTHORS Dekens MPS, Fontinha BM, Gallach M, Pflugler S and Tessmar-Raible K. TITLE Melanopsin elevates locomotor activity during the wake state of the diurnal zebrafish JOURNAL EMBO Rep 23 (5), e51528 (2022) PUBMED 35233929 REFERENCE 2 (bases 1 to 1268) AUTHORS Khan ZA, Yumnamcha T, Rajiv C, Sanjita Devi H, Mondal G, Devi SD, Bharali R and Chattoraj A. TITLE Melatonin biosynthesizing enzyme genes and clock genes in ovary and whole brain of zebrafish (Danio rerio): Differential expression and a possible interplay JOURNAL Gen Comp Endocrinol 233, 16-31 (2016) PUBMED 27179881 REFERENCE 3 (bases 1 to 1268) AUTHORS Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y and Bobe J. TITLE Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database JOURNAL BMC Genomics 17, 368 (2016) PUBMED 27189481 REMARK Publication Status: Online-Only COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC154029.1. ##Evidence-Data-START## Transcript exon combination :: BC154029.1 [ECO:0000332] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1268 /organism="Danio rerio" /mol_type="mRNA" /db_xref="taxon:7955" /chromosome="9" /map="9" gene 1..1268 /gene="asmt" /gene_synonym="hiomt; zgc:171885" /note="acetylserotonin O-methyltransferase" /db_xref="GeneID:100141344" /db_xref="ZFIN:ZDB-GENE-080220-43" exon 1..98 /gene="asmt" /gene_synonym="hiomt; zgc:171885" /inference="alignment:Splign:2.1.0" CDS 30..1064 /gene="asmt" /gene_synonym="hiomt; zgc:171885" /EC_number="2.1.1.4" /codon_start=1 /product="acetylserotonin O-methyltransferase" /protein_id="NP_001108381.1" /db_xref="GeneID:100141344" /db_xref="ZFIN:ZDB-GENE-080220-43" /translation="
MAEEAELYPKKILEYMEGFLVSKTLFSACELGVFELLQSACLSAGQVSAALSTSVDGTERLLSACVGLQLLNTHTHTDRTVLYSNTEMSNVFLVKSSPKSLYHSIEYSSRTIYLCWHYLSDAVRDGKNQYEKAFGVNSKDLFEALYRSDDEMVKFMHLMNSVWNICGRDVITAFDLTPYKTICDLGGCSGALAKQCVSAYPESSVTIFDLPRVVQNSQKHFMTDQDPRIAFCEGDFFKDELPQADLYILARILHDWTDQRSVELLTKIYQSCRPGGALLLAEALLHEDDSGPLTVQLYSLNMLVQTEGRERKASEYTRLLNAAGFTHVHTHTTGKIYDAVLAIK"
misc_feature 63..326 /gene="asmt" /gene_synonym="hiomt; zgc:171885" /note="dimerization domain; Region: dimerization2; pfam16864" /db_xref="CDD:465287" misc_feature 375..1004 /gene="asmt" /gene_synonym="hiomt; zgc:171885" /note="O-methyltransferase domain; Region: Methyltransf_2; pfam00891" /db_xref="CDD:395719" exon 99..270 /gene="asmt" /gene_synonym="hiomt; zgc:171885" /inference="alignment:Splign:2.1.0" exon 271..400 /gene="asmt" /gene_synonym="hiomt; zgc:171885" /inference="alignment:Splign:2.1.0" exon 401..469 /gene="asmt" /gene_synonym="hiomt; zgc:171885" /inference="alignment:Splign:2.1.0" exon 470..588 /gene="asmt" /gene_synonym="hiomt; zgc:171885" /inference="alignment:Splign:2.1.0" exon 589..729 /gene="asmt" /gene_synonym="hiomt; zgc:171885" /inference="alignment:Splign:2.1.0" exon 730..852 /gene="asmt" /gene_synonym="hiomt; zgc:171885" /inference="alignment:Splign:2.1.0" exon 853..1068 /gene="asmt" /gene_synonym="hiomt; zgc:171885" /inference="alignment:Splign:2.1.0" exon 1069..1253 /gene="asmt" /gene_synonym="hiomt; zgc:171885" /inference="alignment:Splign:2.1.0" ORIGIN
gaacaatcactgtgaacacacagaaaaacatggcagaagaagcggagctgtaccccaaaaagatcctcgaatacatggaggggttcctggtgtccaagactctgttctccgcctgtgagctgggtgtgtttgagctcctgcagtctgcgtgtctgtctgctggtcaggtttctgcagctctgagcaccagtgtggacgggacggagcgtctgctgtctgcgtgtgtggggctgcagctgctcaatacacacacacacaccgacagaactgttctgtacagtaacacagagatgtcgaatgtgttcctggtcaagtccagcccgaagtctctgtatcactctatcgagtacagctccagaaccatctacctgtgctggcattacctgagcgacgccgtccgagacgggaagaaccagtatgagaaagcctttggagtcaactctaaagacctgtttgaagccctctacaggtctgatgatgagatggtgaagtttatgcacctgatgaactcggtctggaatatctgcgggcgagacgtgatcacagccttcgacctgacaccgtacaagaccatctgtgacctcggaggctgcagtggagccctggccaaacagtgtgtgtcggcatacccagagtcttccgtcaccatctttgaccttcccagagtggtgcaaaactcacagaaacacttcatgacggaccaagacccgcgcatcgccttctgtgaaggagacttcttcaaggacgagctcccgcaggccgatctctacattctggcccggattctgcatgactggactgaccagcggagtgtggagctgctgaccaagatataccagtcctgtagaccaggtggagcgctgctgctggctgaagctcttcttcatgaggatgactctggtcctctgacggttcagctttattccctcaatatgttggtccagacggagggtcgcgagcgcaaggcttcagaatacacacgtctgctgaacgccgccggcttcacacacgtacacacacacaccaccggcaagatctatgacgctgttttggccatcaaataaatgaacacacacacacacacacacacacacacacacacacacacagacacacacagacacacacacactgatcagctggctctgaggctgtaaggcagttgttgctcagtttctgtttagtttacagcacaaatatctaaacctgatgtgtgtaaaattaagtataaataaataaaataaaataaaaaaaaaaaaaaaaaaaaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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