LOCUS       NM_001114566            1308 bp    mRNA    linear   VRT 03-APR-2024
DEFINITION  Danio rerio zgc:172182 (zgc:172182), mRNA.
ACCESSION   NM_001114566
VERSION     NM_001114566.1
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 1308)
  AUTHORS   Pasquier,J., Cabau,C., Nguyen,T., Jouanno,E., Severac,D.,
            Braasch,I., Journot,L., Pontarotti,P., Klopp,C., Postlethwait,J.H.,
            Guiguen,Y. and Bobe,J.
  TITLE     Gene evolution and gene expression after whole genome duplication
            in fish: the PhyloFish database
  JOURNAL   BMC Genomics 17, 368 (2016)
   PUBMED   27189481
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1308)
  AUTHORS   Van Wayenbergh,R., Taelman,V., Pichon,B., Fischer,A., Kricha,S.,
            Gessler,M., Christophe,D. and Bellefroid,E.J.
  TITLE     Identification of BOIP, a novel cDNA highly expressed during
            spermatogenesis that encodes a protein interacting with the orange
            domain of the hairy-related transcription factor HRT1/Hey1 in
            Xenopus and mouse
  JOURNAL   Dev Dyn 228 (4), 716-725 (2003)
   PUBMED   14648848
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC154573.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC154573.1 [ECO:0000332]
            RNAseq introns              :: mixed/partial sample support
                                           SAMEA2168446, SAMEA2168447
                                           [ECO:0000350]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1308
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /db_xref="taxon:7955"
                     /chromosome="9"
                     /map="9"
     gene            1..1308
                     /gene="zgc:172182"
                     /gene_synonym="boip; ccdc89"
                     /note="zgc:172182"
                     /db_xref="GeneID:100136847"
                     /db_xref="ZFIN:ZDB-GENE-080204-56"
     exon            1..143
                     /gene="zgc:172182"
                     /gene_synonym="boip; ccdc89"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    51..53
                     /gene="zgc:172182"
                     /gene_synonym="boip; ccdc89"
                     /note="upstream in-frame stop codon"
     CDS             84..1148
                     /gene="zgc:172182"
                     /gene_synonym="boip; ccdc89"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 89"
                     /protein_id="NP_001108038.1"
                     /db_xref="GeneID:100136847"
                     /db_xref="ZFIN:ZDB-GENE-080204-56"
                     /translation="

MTSPQKIPIDLKMMIKDTKQDMDDVHQALEKLRSLSQEERTEAEVLRSRIDEQSTLICILKRRADEMLLRCQALEKINAELENLRANVQVELENERKKSELLEQRFMDLASNHRELINFKNEYKSQNAKLEKENERLRKENEALFSEEVQEKEETILKLTQELKDLAEQHKILENEYQEKTTGFQIKLKELMNLHRIKEASLKNELSDTQKQLKTAVEMCAELDLKLRQTQVKESMRETDTQERLEKLIKEKDELIDLSVQRGKIIRDKQVEIQELERKRQEAENGRRHAEDRFEKEAAAVNSELRVKELREALERAEFSCNELKKEFEAFKKHSCELLEKEKELNCKLRHMII"

     misc_feature    <201..1025
                     /gene="zgc:172182"
                     /gene_synonym="boip; ccdc89"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
     exon            144..616
                     /gene="zgc:172182"
                     /gene_synonym="boip; ccdc89"
                     /inference="alignment:Splign:2.1.0"
     exon            617..747
                     /gene="zgc:172182"
                     /gene_synonym="boip; ccdc89"
                     /inference="alignment:Splign:2.1.0"
     exon            748..884
                     /gene="zgc:172182"
                     /gene_synonym="boip; ccdc89"
                     /inference="alignment:Splign:2.1.0"
     exon            885..961
                     /gene="zgc:172182"
                     /gene_synonym="boip; ccdc89"
                     /inference="alignment:Splign:2.1.0"
     exon            962..1061
                     /gene="zgc:172182"
                     /gene_synonym="boip; ccdc89"
                     /inference="alignment:Splign:2.1.0"
     exon            1062..1276
                     /gene="zgc:172182"
                     /gene_synonym="boip; ccdc89"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gccaggatcactgcagctcactgcggtcgagagccctttgtgaagaaatctgattttatttctgcggaatagcgagattaaacatgacatctcctcagaaaatcccgatagacctgaaaatgatgatcaaagacactaaacaggatatggatgatgtgcaccaggccctggaaaaactcagaagtctctcgcaggaagagcgtacagaagcagaagtgctgcgctcgagaatcgatgagcagtctactctcatctgcatcctgaaaaggcgagcggacgagatgctcctgcgctgtcaggctctggagaagatcaacgccgagctagagaacctgagagccaatgtgcaggtggagctggagaatgagaggaaaaaatctgaactgctggagcagaggttcatggacctggcctcaaaccacagagagctcatcaatttcaagaacgagtacaaaagccagaacgcaaagctggagaaggagaatgagagactccgaaaggaaaacgaagctctgttcagtgaggaagtgcaagagaaggaggagaccattctcaaactgacccaagagcttaaggatttggcagagcaacataagatactggaaaatgagtatcaggagaaaacaacaggtttccagattaagctgaaagaacttatgaacctccatcggatcaaagaagcgtctttaaagaacgaactaagtgacacacaaaaacagctgaagactgctgtagagatgtgtgcagagctcgatcttaaactaagacaaactcaagtaaaggaatcaatgagagagacggacactcaagaaagactggagaaactaatcaaggaaaaggacgagctaattgatctctctgtgcagcgtggaaaaatcataagggacaagcaagttgaaattcaggagctggaaaggaaaaggcaggaagctgagaacggcagacgacatgcagaggacaggtttgagaaggaagcagcagccgtgaacagtgagttaagagtgaaggaacttcgagaggctttagagagagcagaattctcctgcaatgagttgaaaaaggagtttgaggcatttaaaaagcacagctgtgaactgcttgaaaaggagaaggagttaaactgcaaacttcgccacatgatcatctgactcttccattccattccatctgtatttctaccatcagctaaatcaggcttaatcttgagaaaaccattcacttcctgctgagatggatggaaaagaattaaagggatagttttcagctttctttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

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