LOCUS       NM_001020613            1722 bp    mRNA    linear   VRT 12-APR-2020
DEFINITION  Danio rerio claudin 10b (cldn10b), mRNA.
ACCESSION   NM_001020613 NM_001113655 XM_696795
VERSION     NM_001020613.2
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 1722)
  AUTHORS   Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I,
            Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y and
            Bobe J.
  TITLE     Gene evolution and gene expression after whole genome duplication
            in fish: the PhyloFish database
  JOURNAL   BMC Genomics 17, 368 (2016)
   PUBMED   27189481
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1722)
  AUTHORS   Baltzegar DA, Reading BJ, Brune ES and Borski RJ.
  TITLE     Phylogenetic revision of the claudin gene family
  JOURNAL   Mar Genomics 11, 17-26 (2013)
   PUBMED   23726886
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CABZ01067560.1.
            
            On or before Feb 23, 2011 this sequence version replaced
            NM_001113655.1, NM_001020613.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC095342.1, BC154820.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2168448, SAMEA3505370
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-293               CABZ01067560.1     7126-7418           c
            294-455             CABZ01067560.1     6061-6222           c
            456-537             CABZ01067560.1     5760-5841           c
            538-642             CABZ01067560.1     5560-5664           c
            643-1722            CABZ01067560.1     4122-5201           c
FEATURES             Location/Qualifiers
     source          1..1722
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="Tuebingen"
                     /db_xref="taxon:7955"
                     /chromosome="9"
                     /map="9"
     gene            1..1722
                     /gene="cldn10b"
                     /gene_synonym="zgc:110625"
                     /note="claudin 10b"
                     /db_xref="GeneID:100004456"
                     /db_xref="ZFIN:ZDB-GENE-050522-42"
     exon            1..293
                     /gene="cldn10b"
                     /gene_synonym="zgc:110625"
                     /inference="alignment:Splign:2.1.0"
     CDS             74..775
                     /gene="cldn10b"
                     /gene_synonym="zgc:110625"
                     /codon_start=1
                     /product="uncharacterized protein LOC100004456 precursor"
                     /protein_id="NP_001018449.2"
                     /db_xref="GeneID:100004456"
                     /db_xref="ZFIN:ZDB-GENE-050522-42"
                     /translation="

MRNMAREILAFILCTSGWVLISSTLPTDYWKVSSIDGTVITTATFWSNLWKTCVTDSTGVSNCKDFPSMLALDGYIQVCRGLMITAVCLGFFGSIFALIGMKCTKIGGPDKFKARVVCFAGFNFACTGLCSLTAYSLYAHRITSEFFDPMFVAQKYELGAALFIGWAGSTLCLLGGALFTLSMADGSSKKSSPNRRVASLMSGAMPQSQTSHTRRTLPEYSSTPQHFDKNAYV"

     sig_peptide     74..142
                     /gene="cldn10b"
                     /gene_synonym="zgc:110625"
                     /inference="COORDINATES: ab initio prediction:SignalP:4.0"
     misc_feature    83..610
                     /gene="cldn10b"
                     /gene_synonym="zgc:110625"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:473919"
     exon            294..455
                     /gene="cldn10b"
                     /gene_synonym="zgc:110625"
                     /inference="alignment:Splign:2.1.0"
     exon            456..537
                     /gene="cldn10b"
                     /gene_synonym="zgc:110625"
                     /inference="alignment:Splign:2.1.0"
     exon            538..642
                     /gene="cldn10b"
                     /gene_synonym="zgc:110625"
                     /inference="alignment:Splign:2.1.0"
     exon            643..1722
                     /gene="cldn10b"
                     /gene_synonym="zgc:110625"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gtgtgttcagagttcctcctcctaccctggattaaataccgccgctcctctagtgctcttcacaggctggagaatgaggaacatggcgagagagatcctggccttcatcctctgcacgtcgggctgggtgctgatctcctccactttacccacagactactggaaggtgtcttcgatcgacggcacggtcatcaccacagccaccttctggtccaacctgtggaaaacctgcgtgaccgactccaccggcgtctccaactgcaaagacttcccttcaatgctggcgctggacggttatatccaggtgtgccgtggcctgatgatcactgctgtctgtctgggtttctttggctccatctttgctctgatcgggatgaagtgcacaaagatcggcggcccggacaagttcaaagccagagtcgtctgctttgctggattcaacttcgcttgtactggtctgtgctctctgaccgcgtactcgctctacgctcacaggatcacctcggagtttttcgaccccatgtttgtagcgcagaagtatgagctgggcgccgctctgttcatcggctgggctggatccactctgtgtctgctcggaggagcgctcttcaccctgtccatggctgacggcagcagcaagaagagttctccgaacagaagagtcgcgtctctaatgtcgggagcgatgcctcagagtcagacgtcccacaccaggaggactcttccagaatacagcagcactccacagcacttcgacaaaaacgcctacgtataacacacagcggacgtcatctcaagagcttctgtagcttttatgaagagttcgctgagcagaagtgaagagtaactcactcctgagctcctcacaagacttctgttcgtctactcaaaggaagaaatttgtacatttaatttgcttttttattgtagatgacaaacagttttataacttgaggaaatttgcattttttacttctgatcgtagtatagagcgggatttggctgtgaatacatctgggcatcgagtcatgttcagtctcttattggcgcaggagtgcagttcactgaatggccagcggtgtcgctaaaatcaagagtttcacagttgtgcacacagcctacatttcttacggctcattcacacgggccgtcagcgtcaacgcttcccattcactttgaatggttgacgtcaagcgttgcccaactgcattgtggatctgtcggcgccgcttcagaggcgttgctcgctgcagacggactttctaaacttttcaagcgcagaagcgtcagccaatcagatcgctgtatgcaaatacaccagctagacagtggcctattgctgactgaatttcattggctgacgctgctatgacgatcgcttcagccccaatttcaggcacgccctcagtcaagcgttgacgctgaagccccgtgtgaatggagagataatcgacaaaatattcaatgtaaaataaagtttttcaagaactgaaattacaccaaatgcaaaatgacgtgttcatgtgagtaaatgaacaaacatggcgatagtggtgaaactgctgcaagtggcacgaataccacaaactgattcatttctggaacagagcattcagattgctacacaaatctggcaaattttgcatgaagtatatctttttctgaaggttttagctctgaacatttggctgaacagttcattaaacatctttgtgtttcaaa

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