LOCUS       NM_001013475            1087 bp    mRNA    linear   VRT 03-APR-2024
DEFINITION  Danio rerio BRCA2 and CDKN1A interacting protein (bccip), mRNA.
ACCESSION   NM_001013475
VERSION     NM_001013475.2
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 1087)
  AUTHORS   Elkon,R., Milon,B., Morrison,L., Shah,M., Vijayakumar,S.,
            Racherla,M., Leitch,C.C., Silipino,L., Hadi,S., Weiss-Gayet,M.,
            Barras,E., Schmid,C.D., Ait-Lounis,A., Barnes,A., Song,Y.,
            Eisenman,D.J., Eliyahu,E., Frolenkov,G.I., Strome,S.E., Durand,B.,
            Zaghloul,N.A., Jones,S.M., Reith,W. and Hertzano,R.
  TITLE     RFX transcription factors are essential for hearing in mice
  JOURNAL   Nat Commun 6, 8549 (2015)
   PUBMED   26469318
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1087)
  AUTHORS   Woods,I.G., Wilson,C., Friedlander,B., Chang,P., Reyes,D.K.,
            Nix,R., Kelly,P.D., Chu,F., Postlethwait,J.H. and Talbot,W.S.
  TITLE     The zebrafish gene map defines ancestral vertebrate chromosomes
  JOURNAL   Genome Res 15 (9), 1307-1314 (2005)
   PUBMED   16109975
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            EH457160.1 and EH572117.1.
            
            On Feb 1, 2011 this sequence version replaced NM_001013475.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC091454.1, EH485967.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA4476732, SAMEA4476771
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-917               EH457160.1         35-951
            918-1087            EH572117.1         1-170               c
FEATURES             Location/Qualifiers
     source          1..1087
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="Tuebingen"
                     /db_xref="taxon:7955"
                     /chromosome="12"
                     /map="12"
     gene            1..1087
                     /gene="bccip"
                     /gene_synonym="mp:zf637-1-000774; zgc:110272"
                     /note="BRCA2 and CDKN1A interacting protein"
                     /db_xref="GeneID:541348"
                     /db_xref="ZFIN:ZDB-GENE-050320-39"
     exon            1..194
                     /gene="bccip"
                     /gene_synonym="mp:zf637-1-000774; zgc:110272"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    54..56
                     /gene="bccip"
                     /gene_synonym="mp:zf637-1-000774; zgc:110272"
                     /note="upstream in-frame stop codon"
     CDS             63..968
                     /gene="bccip"
                     /gene_synonym="mp:zf637-1-000774; zgc:110272"
                     /codon_start=1
                     /product="protein BCCIP homolog"
                     /protein_id="NP_001013493.2"
                     /db_xref="GeneID:541348"
                     /db_xref="ZFIN:ZDB-GENE-050320-39"
                     /translation="

MASSAKRRAVETGQNPQDSDESSDEGLEDSGDDDSENSEEEVNEEVIVDFEAHTISDNDFHGIKTLLQQLFLKCHVNTSDLTDIIIQQNHIGSVIRQAEVPEDSDDEGDPDEVFGFISMVNLTERQGVECLEKLKDMILDQCVKCSTPDVQERMENLLQGNTQSVGLLLSERFVNVPPQIALPLHKQLQKEMAEAQRTNKPSGKCQFCLMISKTCKPLKKKSISAGDQAKDELLFVNDEEEFFYEQATVKFSYCVQDEADSCATGKWSYDDEPMKPFRTVMVIPMDRMDTIMQKMTDYLTV"

     misc_feature    63..191
                     /gene="bccip"
                     /gene_synonym="mp:zf637-1-000774; zgc:110272"
                     /note="propagated from UniProtKB/Swiss-Prot (Q5BJJ7.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    204..791
                     /gene="bccip"
                     /gene_synonym="mp:zf637-1-000774; zgc:110272"
                     /note="Region: BCCIP; pfam13862"
                     /db_xref="CDD:464002"
     exon            195..269
                     /gene="bccip"
                     /gene_synonym="mp:zf637-1-000774; zgc:110272"
                     /inference="alignment:Splign:2.1.0"
     exon            270..350
                     /gene="bccip"
                     /gene_synonym="mp:zf637-1-000774; zgc:110272"
                     /inference="alignment:Splign:2.1.0"
     exon            351..440
                     /gene="bccip"
                     /gene_synonym="mp:zf637-1-000774; zgc:110272"
                     /inference="alignment:Splign:2.1.0"
     exon            441..628
                     /gene="bccip"
                     /gene_synonym="mp:zf637-1-000774; zgc:110272"
                     /inference="alignment:Splign:2.1.0"
     exon            629..797
                     /gene="bccip"
                     /gene_synonym="mp:zf637-1-000774; zgc:110272"
                     /inference="alignment:Splign:2.1.0"
     exon            798..1087
                     /gene="bccip"
                     /gene_synonym="mp:zf637-1-000774; zgc:110272"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gacgacacaaaacgtcgccgtgcgcgagctcgtgtctgtttcctgtacactagtgaagcagcatggcttcatctgccaaaaggcgtgctgttgaaactggacaaaatccacaagacagcgacgaaagctcggacgagggtctggaagactctggcgacgacgacagcgaaaattcagaagaagaagtaaacgaggaggttattgtggacttcgaagcacacacgatctctgacaacgactttcacggcatcaaaacccttcttcaacagctgtttctgaagtgtcacgtgaacacttctgacctcactgacatcatcatccagcagaaccacatcggcagtgtcatcaggcaagctgaagtaccggaggacagtgatgatgagggcgacccggacgaggtgtttggcttcatcagtatggtgaacctcaccgagagacagggtgtggagtgtctggagaagctgaaggacatgatactggatcagtgtgtgaagtgcagcactccggatgtgcaggagcggatggagaatctcctgcagggtaacactcagtctgtagggctcctgctgagcgagagattcgtcaacgtcccgccgcagatcgctctgcccctgcacaaacaactgcagaaggaaatggctgaagctcaaaggaccaataaacccagcggtaaatgccagttctgtctgatgatcagcaaaacatgcaagccattgaagaagaagagcatttctgcaggagaccaggctaaagacgagctgctgttcgtgaatgacgaggaggagttcttttatgagcaagcaacggtgaagttcagctactgtgttcaggatgaggcggactcgtgtgcgacagggaaatggtcgtacgatgacgagccaatgaagccgtttcgcacagtgatggtgatccccatggacagaatggacaccatcatgcagaaaatgactgattatctgaccgtctgaacacactttaaccttccaggccagtttgaccacaaatcacccaaaccagtgaaataatttattcattctgtacataatcagcccacaaaaataataataaacaacccaaacagattgac

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