LOCUS       NM_001007438            2171 bp    mRNA    linear   VRT 16-SEP-2024
DEFINITION  Danio rerio HAUS augmin-like complex, subunit 5 (haus5), mRNA.
ACCESSION   NM_001007438
VERSION     NM_001007438.1
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 2171)
  AUTHORS   Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M,
            Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD,
            Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov
            GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W and
            Hertzano R.
  TITLE     RFX transcription factors are essential for hearing in mice
  JOURNAL   Nat Commun 6, 8549 (2015)
   PUBMED   26469318
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2171)
  AUTHORS   Ho NY, Yang L, Legradi J, Armant O, Takamiya M, Rastegar S and
            Strahle U.
  TITLE     Gene responses in the central nervous system of zebrafish embryos
            exposed to the neurotoxicant methyl mercury
  JOURNAL   Environ. Sci. Technol. 47 (7), 3316-3325 (2013)
   PUBMED   23458150
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC085405.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC085405.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA3505370,
                                           SAMEA3505371 [ECO:0006172]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2171
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /db_xref="taxon:7955"
                     /chromosome="8"
                     /map="8"
     gene            1..2171
                     /gene="haus5"
                     /gene_synonym="zgc:101661"
                     /note="HAUS augmin-like complex, subunit 5"
                     /db_xref="GeneID:492797"
                     /db_xref="ZFIN:ZDB-GENE-041114-150"
     exon            1..118
                     /gene="haus5"
                     /gene_synonym="zgc:101661"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    15..17
                     /gene="haus5"
                     /gene_synonym="zgc:101661"
                     /note="upstream in-frame stop codon"
     CDS             27..1952
                     /gene="haus5"
                     /gene_synonym="zgc:101661"
                     /codon_start=1
                     /product="HAUS augmin-like complex subunit 5"
                     /protein_id="NP_001007439.1"
                     /db_xref="GeneID:492797"
                     /db_xref="ZFIN:ZDB-GENE-041114-150"
                     /translation="

MSSLSQELKRWAVEELELPASRLPDDGYMKTLCVGPGASIWKYITQHVYKERNVRVVRGNIQWYKVLQDKELKQLKNQNNDARKLELQREIDALQTELSQLDTKITRVEDQLAAEEQSLNRNWDGFTESRCRQILLDCFRQRCSEDRNALLEDTRVIGDQRQSLDELAKKAEVKLVFGPSDQSDNEAGADPLVLKDVRELCNERVHFLQCLLEGELKANPSTQFTRDQRHAVIQHWTSAVENVLRSHPPNQVLSALQALTSRHQVALEEKITALNLERDVSALGFRYESDHLIDVSSELEELTPVRSLLQSAWEEVEQSYFELAQTRSRRRQMETELTALIRKAEATHKTDSVSRCVFELEMEAVKQVSVRDSIRDQCVQLQQQARQGQDAIRALQTHWQTVMDFRQLVNRRQEQIRSLIKGNSSVKAELTRVHEEVGQFFKDELSPQFVTVIGASSGQRNSVSQGAKHFSCVSLAALDRRVMKGGQRAPAAQLSIHRIQSLAFHKLCESLSFPMYMAPEELWSQAVTRRLEFRNLRRLLQLFSDSAADLQKRAAQLPSPDQQTLLQRVKMEDEEILQTLLPRARELMHRCSKGLLYSEQVKTAITHWWDQPAQFALPEMEREGLTFQQWLQRWRLATKES"

     misc_feature    39..1922
                     /gene="haus5"
                     /gene_synonym="zgc:101661"
                     /note="HAUS augmin-like complex subunit 5; Region: HAUS5;
                     pfam14817"
                     /db_xref="CDD:464332"
     exon            119..181
                     /gene="haus5"
                     /gene_synonym="zgc:101661"
                     /inference="alignment:Splign:2.1.0"
     exon            182..214
                     /gene="haus5"
                     /gene_synonym="zgc:101661"
                     /inference="alignment:Splign:2.1.0"
     exon            215..239
                     /gene="haus5"
                     /gene_synonym="zgc:101661"
                     /inference="alignment:Splign:2.1.0"
     exon            240..372
                     /gene="haus5"
                     /gene_synonym="zgc:101661"
                     /inference="alignment:Splign:2.1.0"
     exon            373..532
                     /gene="haus5"
                     /gene_synonym="zgc:101661"
                     /inference="alignment:Splign:2.1.0"
     exon            533..608
                     /gene="haus5"
                     /gene_synonym="zgc:101661"
                     /inference="alignment:Splign:2.1.0"
     exon            609..694
                     /gene="haus5"
                     /gene_synonym="zgc:101661"
                     /inference="alignment:Splign:2.1.0"
     exon            695..749
                     /gene="haus5"
                     /gene_synonym="zgc:101661"
                     /inference="alignment:Splign:2.1.0"
     exon            750..877
                     /gene="haus5"
                     /gene_synonym="zgc:101661"
                     /inference="alignment:Splign:2.1.0"
     exon            878..956
                     /gene="haus5"
                     /gene_synonym="zgc:101661"
                     /inference="alignment:Splign:2.1.0"
     exon            957..1090
                     /gene="haus5"
                     /gene_synonym="zgc:101661"
                     /inference="alignment:Splign:2.1.0"
     exon            1091..1253
                     /gene="haus5"
                     /gene_synonym="zgc:101661"
                     /inference="alignment:Splign:2.1.0"
     exon            1254..1334
                     /gene="haus5"
                     /gene_synonym="zgc:101661"
                     /inference="alignment:Splign:2.1.0"
     exon            1335..1480
                     /gene="haus5"
                     /gene_synonym="zgc:101661"
                     /inference="alignment:Splign:2.1.0"
     exon            1481..1577
                     /gene="haus5"
                     /gene_synonym="zgc:101661"
                     /inference="alignment:Splign:2.1.0"
     exon            1578..1716
                     /gene="haus5"
                     /gene_synonym="zgc:101661"
                     /inference="alignment:Splign:2.1.0"
     exon            1717..1849
                     /gene="haus5"
                     /gene_synonym="zgc:101661"
                     /inference="alignment:Splign:2.1.0"
     exon            1850..2155
                     /gene="haus5"
                     /gene_synonym="zgc:101661"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gttttattatcaagtgactgaaaaagatgtcgagtcttagtcaggaactgaagcgctgggctgttgaggagcttgagctgccagcatccagactcccggacgacggctatatgaagacattgtgcgtcggtcctggagcatccatttggaagtatatcacacaacatgtttataaagagaggaatgttcgggtggtgcgggggaatatccagtggtacaaagttttacaagataaagagttaaaacagttgaagaatcaaaataatgatgcacgaaagcttgagctccagagagaaattgatgcacttcagactgaactcagtcaactggacacaaagatcactagagtggaggatcaacttgctgctgaagagcaaagcttgaacaggaactgggacggctttacagagagcagatgcagacagatcctgttggattgtttcaggcagcgatgctctgaggacagaaatgctttgctagaggatacacgcgtgattggtgaccaaagacagtccctggacgaactggccaagaaagctgaagtgaagctggtgtttggaccatctgaccaatcagacaatgaagctggagcagaccccttagttttaaaggatgtgagagagctctgcaacgagagggttcacttcctccaatgcctgttggaaggcgagctaaaagcaaatccatccacgcaatttactcgagatcagaggcatgctgtgatccagcactggacaagtgctgtggagaatgttttacgatctcatccaccaaaccaagtgctttcagctttgcaagccttgacctccagacatcaggtggcactggaggagaagatcactgctttaaatttggagcgtgacgtttcagctttagggtttcgttatgagagcgatcacctaatagatgtgtcttctgagcttgaggagttaactcctgtccgcagtctgttacagtctgcctgggaggaggtggaacagagttattttgagttggctcagactcgaagtagaaggcggcaaatggagactgaactaacggctttgataagaaaagcagaggcgacacacaaaacagactctgtgtccaggtgtgtgtttgagttggagatggaggcagtgaagcaggtatcagttcgggacagcatcagagatcagtgtgttcagctacagcagcaggccagacagggtcaggacgccatcagagccctgcagacgcattggcagactgtcatggactttagacagcttgtgaaccggagacaagagcagatacgaagcctgatcaagggaaactcatctgtgaaggctgaattaacacgtgtccatgaagaggttggacagttttttaaggatgagctcagtcctcagtttgtcactgtgattggagccagcagtggacagcgcaattctgtgtctcagggtgccaagcattttagctgtgtatcacttgcagcactggatcgcagagtcatgaaggggggacagagggcaccagcggctcagctttccatccaccggatacaatcactagctttccacaaactctgtgaaagcctctcatttcctatgtacatggctccagaagagctgtggtctcaggctgtgactcgacggctggagttcagaaatctgcgcaggcttcttcagcttttctcagattcagccgcagacctgcagaagcgggccgcacagttaccatcacccgatcagcagactttgctgcagcgagtgaaaatggaagatgaggagattctgcagacgctgctccctcgggctcgtgagctcatgcacaggtgctctaaaggcctgctttactctgaacaagtgaagactgccatcacacactggtgggatcagcctgctcagtttgcgctgccggagatggagagagaaggactgaccttccagcagtggctccagaggtggagacttgctactaaagaatcctgacttagctctgcataaagtgaagtttacatgtatctgtacaccgttcacactttatcaaatctctcttgcctttgaataacctgataagtagtatagttttctagttattaccctgttcagttgtttgtacatccctattcgagaaatattttgggcactttttaatgaatttcacaataaataagcaataatagacactggaaaaaaaaaaaaaaaaaa

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