LOCUS       NM_001007037             711 bp    mRNA    linear   VRT 14-OCT-2021
DEFINITION  Danio rerio claudin 10a (cldn10a), mRNA.
ACCESSION   NM_001007037
VERSION     NM_001007037.1
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 711)
  AUTHORS   McKee R, Gerlach GF, Jou J, Cheng CN and Wingert RA.
  TITLE     Temporal and spatial expression of tight junction genes during
            zebrafish pronephros development
  JOURNAL   Gene Expr Patterns 16 (2), 104-113 (2014)
   PUBMED   25460834
REFERENCE   2  (bases 1 to 711)
  AUTHORS   Baltzegar DA, Reading BJ, Brune ES and Borski RJ.
  TITLE     Phylogenetic revision of the claudin gene family
  JOURNAL   Mar Genomics 11, 17-26 (2013)
   PUBMED   23726886
REFERENCE   3  (bases 1 to 711)
  AUTHORS   Loh YH, Christoffels A, Brenner S, Hunziker W and Venkatesh B.
  TITLE     Extensive expansion of the claudin gene family in the teleost fish,
            Fugu rubripes
  JOURNAL   Genome Res 14 (7), 1248-1257 (2004)
   PUBMED   15197168
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AL591370.10.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC163751.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2168448, SAMN01765705
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..711
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /db_xref="taxon:7955"
                     /chromosome="6"
                     /map="6"
     gene            1..711
                     /gene="cldn10a"
                     /gene_synonym="cldn10; dZ52I16.3; si:busm1-52i16.3;
                     si:dz52i16.3"
                     /note="claudin 10a"
                     /db_xref="GeneID:368619"
                     /db_xref="ZFIN:ZDB-GENE-030616-510"
     CDS             1..711
                     /gene="cldn10a"
                     /gene_synonym="cldn10; dZ52I16.3; si:busm1-52i16.3;
                     si:dz52i16.3"
                     /note="claudin 10"
                     /codon_start=1
                     /product="claudin-10a precursor"
                     /protein_id="NP_001007038.1"
                     /db_xref="GeneID:368619"
                     /db_xref="ZFIN:ZDB-GENE-030616-510"
                     /translation="

MGSMATEIVAFLLTISGWILVSSTLPTDYWKVSSVDGTVITTATFWSNLWKTCVTDSTGVSNCKDFPSMLALDAYIQVCRGLMISAVCLGFFGASLALVGMKCTRIGGSETTKARITCLCGLHFILSGICSITACSLYAHRITSEFFDPLFVKQKFELGAALFIGWAGSVLSILGGLIFCFSMTEGFSIREYSYNGATSVISTRTKITKTNKSTKSQKDPSDQMFSGRRFGRNAYV"

     sig_peptide     1..69
                     /gene="cldn10a"
                     /gene_synonym="cldn10; dZ52I16.3; si:busm1-52i16.3;
                     si:dz52i16.3"
                     /inference="COORDINATES: ab initio prediction:SignalP:4.0"
     misc_feature    10..537
                     /gene="cldn10a"
                     /gene_synonym="cldn10; dZ52I16.3; si:busm1-52i16.3;
                     si:dz52i16.3"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:473919"
     exon            1..220
                     /gene="cldn10a"
                     /gene_synonym="cldn10; dZ52I16.3; si:busm1-52i16.3;
                     si:dz52i16.3"
                     /inference="alignment:Splign:2.1.0"
     exon            221..382
                     /gene="cldn10a"
                     /gene_synonym="cldn10; dZ52I16.3; si:busm1-52i16.3;
                     si:dz52i16.3"
                     /inference="alignment:Splign:2.1.0"
     exon            383..464
                     /gene="cldn10a"
                     /gene_synonym="cldn10; dZ52I16.3; si:busm1-52i16.3;
                     si:dz52i16.3"
                     /inference="alignment:Splign:2.1.0"
     exon            465..569
                     /gene="cldn10a"
                     /gene_synonym="cldn10; dZ52I16.3; si:busm1-52i16.3;
                     si:dz52i16.3"
                     /inference="alignment:Splign:2.1.0"
     exon            570..711
                     /gene="cldn10a"
                     /gene_synonym="cldn10; dZ52I16.3; si:busm1-52i16.3;
                     si:dz52i16.3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

atgggtagtatggcaacagagatcgttgcttttcttcttaccatttccggatggattctggtgtcctcaacactccccaccgactactggaaagtgtcgtctgtagatggaacggtcatcacaacggccaccttttggtccaatctgtggaagacgtgtgtcacagactcaaccggagtctccaactgcaaggactttccttcaatgctcgcactggatgcttatatccaagtgtgtcgtggcctgatgatctcagctgtatgtttgggcttttttggagccagcctggcactagtgggcatgaagtgcaccagaataggaggatcagagaccaccaaagcccgcatcacctgtctgtgtggactacactttattctgagtggaatctgctctattactgcctgttccctctatgcacaccggatcacatcagagttttttgaccccttatttgtgaaacagaaatttgaacttggcgcggctctgttcatcggctgggcaggatctgtgctgagtattctaggaggattaatcttttgtttttccatgacggagggattcagcatcagggaatactcctacaatggtgccacatctgtcatatcaacaagaaccaagatcacaaagacaaacaaaagcaccaagtctcaaaaagacccctcagatcagatgttctctggcagacggtttggcaggaacgcatatgtctga

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