LOCUS       NM_001006082            1075 bp    mRNA    linear   VRT 15-OCT-2021
DEFINITION  Danio rerio eukaryotic translation initiation factor 1A X-linked a
            (eif1axa), mRNA.
ACCESSION   NM_001006082
VERSION     NM_001006082.2
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 1075)
  AUTHORS   Weh E, Takeuchi H, Muheisen S, Haltiwanger RS and Semina EV.
  TITLE     Functional characterization of zebrafish orthologs of the human
            Beta 3-Glucosyltransferase B3GLCT gene mutated in Peters Plus
            Syndrome
  JOURNAL   PLoS One 12 (9), e0184903 (2017)
   PUBMED   28926587
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1075)
  AUTHORS   Bayes A, Collins MO, Reig-Viader R, Gou G, Goulding D, Izquierdo A,
            Choudhary JS, Emes RD and Grant SG.
  TITLE     Evolution of complexity in the zebrafish synapse proteome
  JOURNAL   Nat Commun 8, 14613 (2017)
   PUBMED   28252024
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1075)
  AUTHORS   Yi T, Arthanari H, Akabayov B, Song H, Papadopoulos E, Qi HH,
            Jedrychowski M, Guttler T, Guo C, Luna RE, Gygi SP, Huang SA and
            Wagner G.
  TITLE     eIF1A augments Ago2-mediated Dicer-independent miRNA biogenesis and
            RNA interference
  JOURNAL   Nat Commun 6, 7194 (2015)
   PUBMED   26018492
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 1075)
  AUTHORS   Lucitt MB, Price TS, Pizarro A, Wu W, Yocum AK, Seiler C, Pack MA,
            Blair IA, Fitzgerald GA and Grosser T.
  TITLE     Analysis of the zebrafish proteome during embryonic development
  JOURNAL   Mol Cell Proteomics 7 (5), 981-994 (2008)
   PUBMED   18212345
REFERENCE   5  (bases 1 to 1075)
  AUTHORS   Kohn M, Hogel J, Vogel W, Minich P, Kehrer-Sawatzki H, Graves JA
            and Hameister H.
  TITLE     Reconstruction of a 450-My-old ancestral vertebrate protokaryotype
  JOURNAL   Trends Genet 22 (4), 203-210 (2006)
   PUBMED   16517001
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC083238.1.
            
            On Aug 31, 2012 this sequence version replaced NM_001006082.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC083238.1, EH506250.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA4476773, SAMEA4476795
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1075              BC083238.1         3-1077
FEATURES             Location/Qualifiers
     source          1..1075
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /db_xref="taxon:7955"
                     /chromosome="5"
                     /map="5"
     gene            1..1075
                     /gene="eif1axa"
                     /gene_synonym="eif1ax; zgc:101670"
                     /note="eukaryotic translation initiation factor 1A
                     X-linked a"
                     /db_xref="GeneID:450062"
                     /db_xref="ZFIN:ZDB-GENE-041010-185"
     exon            1..183
                     /gene="eif1axa"
                     /gene_synonym="eif1ax; zgc:101670"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    105..107
                     /gene="eif1axa"
                     /gene_synonym="eif1ax; zgc:101670"
                     /note="upstream in-frame stop codon"
     CDS             168..602
                     /gene="eif1axa"
                     /gene_synonym="eif1ax; zgc:101670"
                     /codon_start=1
                     /product="eukaryotic translation initiation factor 1A
                     X-linked a"
                     /protein_id="NP_001006082.1"
                     /db_xref="GeneID:450062"
                     /db_xref="ZFIN:ZDB-GENE-041010-185"
                     /translation="

MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDVKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDEILFDDIGENDDDIDDI"

     misc_feature    168..599
                     /gene="eif1axa"
                     /gene_synonym="eif1ax; zgc:101670"
                     /note="eukaryotic translation initiation factor 1A;
                     Provisional; Region: PTZ00329"
                     /db_xref="CDD:185558"
     misc_feature    order(288..293,303..305,345..356,363..365,378..380)
                     /gene="eif1axa"
                     /gene_synonym="eif1ax; zgc:101670"
                     /note="RNA binding site [nucleotide binding]; other site"
                     /db_xref="CDD:240219"
     exon            184..267
                     /gene="eif1axa"
                     /gene_synonym="eif1ax; zgc:101670"
                     /inference="alignment:Splign:2.1.0"
     exon            268..371
                     /gene="eif1axa"
                     /gene_synonym="eif1ax; zgc:101670"
                     /inference="alignment:Splign:2.1.0"
     exon            372..422
                     /gene="eif1axa"
                     /gene_synonym="eif1ax; zgc:101670"
                     /inference="alignment:Splign:2.1.0"
     exon            423..504
                     /gene="eif1axa"
                     /gene_synonym="eif1ax; zgc:101670"
                     /inference="alignment:Splign:2.1.0"
     exon            505..596
                     /gene="eif1axa"
                     /gene_synonym="eif1ax; zgc:101670"
                     /inference="alignment:Splign:2.1.0"
     exon            597..1057
                     /gene="eif1axa"
                     /gene_synonym="eif1ax; zgc:101670"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

ttttgcgcaggcgcagatgatttgggggaagtgctcagaaagtagggggaagtgctcagaaagtagagggaagttgacagcctcccatttaaaagttatatttctgaattcagcaactcggcttttggacatcagtgagcaaaaactgcagtgactgtaatccgaacatgccaaagaataaaggtaaaggaggtaagaatcggcgacgtggtaagaacgagaacgagtcagaaaagagagagctggttttcaaggaggatggccaggaatatgctcaggtgataaagatgctgggaaatggacggctcgaggccatgtgctttgatggggtcaaacggctctgccacatccgagggaagctccgcaaaaaggtctggatcaacacatctgatataatccttgttggtcttagagattaccaggatgtcaaagcagatgtcattttaaagtacaatgcagacgaagcccgcagtcttaaagcctacggagagctcccagaacacgctaaaatcaacgaaacagacacatttggacctggagatgatgatgagatcctgtttgatgatattggagagaacgatgacgacattgatgacatctaactcaggacagctggtgggttatattgtttacactgagaggaaaaacacatccttgtttggggaaaaaaactgcaactctggcataaccgatgcctcgcatcatactgcaggctcctttagaagaacacttcaaaggctttttgcttttcatttcttccctgcgtaatctgacgaacacaagtcttccatttactgacagccactcaaaatagactgcatattttgttttgttatctttttaaagtatttatattatattccattgtatgaggtgagatttaaaatacagaaatccagaatttacagaaaagtcaaaccatttatgtgtttgtgctgaactttatttcttgtatatttgcttttttcttaattatattttaggtagttaatggtcttcttcctcatgggatatacaataatttctgatgagtatgaaataaaaaagatatatatttaaaaaaaaaaaaaaaaaa

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