LOCUS       NM_001004624             992 bp    mRNA    linear   VRT 02-APR-2024
DEFINITION  Danio rerio rhophilin associated tail protein 1-like (ropn1l),
            mRNA.
ACCESSION   NM_001004624 XM_001336126 XM_001336198
VERSION     NM_001004624.1
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 992)
  AUTHORS   Pasquier,J., Cabau,C., Nguyen,T., Jouanno,E., Severac,D.,
            Braasch,I., Journot,L., Pontarotti,P., Klopp,C., Postlethwait,J.H.,
            Guiguen,Y. and Bobe,J.
  TITLE     Gene evolution and gene expression after whole genome duplication
            in fish: the PhyloFish database
  JOURNAL   BMC Genomics 17, 368 (2016)
   PUBMED   27189481
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 992)
  AUTHORS   Hsu,C.C., Hou,M.F., Hong,J.R., Wu,J.L. and Her,G.M.
  TITLE     Inducible male infertility by targeted cell ablation in zebrafish
            testis
  JOURNAL   Mar Biotechnol (NY) 12 (4), 466-478 (2010)
   PUBMED   19936986
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC081402.1.
            
            On or before Aug 25, 2007 this sequence version replaced
            XM_001336126.1, XM_001336198.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC081402.1, BC152162.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2168446, SAMEA2168447
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..992
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /db_xref="taxon:7955"
                     /chromosome="24"
                     /map="24"
     gene            1..992
                     /gene="ropn1l"
                     /gene_synonym="asp; bZ1F1.7; si:rp71-1f1.7; zgc:101773"
                     /note="rhophilin associated tail protein 1-like"
                     /db_xref="GeneID:798354"
                     /db_xref="ZFIN:ZDB-GENE-040724-235"
     exon            1..153
                     /gene="ropn1l"
                     /gene_synonym="asp; bZ1F1.7; si:rp71-1f1.7; zgc:101773"
                     /inference="alignment:Splign:2.1.0"
     exon            154..324
                     /gene="ropn1l"
                     /gene_synonym="asp; bZ1F1.7; si:rp71-1f1.7; zgc:101773"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    170..172
                     /gene="ropn1l"
                     /gene_synonym="asp; bZ1F1.7; si:rp71-1f1.7; zgc:101773"
                     /note="upstream in-frame stop codon"
     CDS             194..850
                     /gene="ropn1l"
                     /gene_synonym="asp; bZ1F1.7; si:rp71-1f1.7; zgc:101773"
                     /note="A-kinase anchoring protein-associated sperm
                     protein; AKAP-associated sperm protein; ropporin 1-like"
                     /codon_start=1
                     /product="ropporin-1-like protein"
                     /protein_id="NP_001004624.1"
                     /db_xref="GeneID:798354"
                     /db_xref="ZFIN:ZDB-GENE-040724-235"
                     /translation="

MPLSETMYCAQQINIPPALPNMLKQFTKAAIRTQPRDVLQWAADYFSALSKGQDLPVKKRLELPVATQKTDTGLTPGLLKILHQQLTSKETVTKDELLPKWKALHLPVEQLDTILALGNFSENINWMQFFALACSALGGSITSALKHACEILTEDPEGGPAQIPFHMFRSLYTYLAHLDGEIPEEQIDSFLHSLEGQAQSQGGMVQPSNFTSLHTAEK"

     misc_feature    221..349
                     /gene="ropn1l"
                     /gene_synonym="asp; bZ1F1.7; si:rp71-1f1.7; zgc:101773"
                     /note="dimerization/docking (D/D) domain found in
                     ropporins; Region: DD_ROP; cd23019"
                     /db_xref="CDD:438555"
     misc_feature    order(230..235,239..241,245..250,257..262,269..274,
                     281..286,293..295,305..313,317..322,329..334,338..343)
                     /gene="ropn1l"
                     /gene_synonym="asp; bZ1F1.7; si:rp71-1f1.7; zgc:101773"
                     /note="putative dimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:438555"
     misc_feature    order(236..238,248..253,260..265,272..277,284..289)
                     /gene="ropn1l"
                     /gene_synonym="asp; bZ1F1.7; si:rp71-1f1.7; zgc:101773"
                     /note="putative AKAP interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:438555"
     misc_feature    788..847
                     /gene="ropn1l"
                     /gene_synonym="asp; bZ1F1.7; si:rp71-1f1.7; zgc:101773"
                     /note="propagated from UniProtKB/Swiss-Prot (Q66IC9.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     exon            325..448
                     /gene="ropn1l"
                     /gene_synonym="asp; bZ1F1.7; si:rp71-1f1.7; zgc:101773"
                     /inference="alignment:Splign:2.1.0"
     exon            449..610
                     /gene="ropn1l"
                     /gene_synonym="asp; bZ1F1.7; si:rp71-1f1.7; zgc:101773"
                     /inference="alignment:Splign:2.1.0"
     exon            611..786
                     /gene="ropn1l"
                     /gene_synonym="asp; bZ1F1.7; si:rp71-1f1.7; zgc:101773"
                     /inference="alignment:Splign:2.1.0"
     exon            787..978
                     /gene="ropn1l"
                     /gene_synonym="asp; bZ1F1.7; si:rp71-1f1.7; zgc:101773"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

acgttgctatgaaaaacagaacaagtcgctgctgcattttaggatgccaaaaaactatatataatactattaatagtatattttctataaagtactaactattatattaataaaacgacataatcgcatctctttatttaaaataacataacgtttctctttcttatcctaaaacacagctcaaagtgaagtgatgcctctttcagaaaccatgtactgcgctcagcagatcaacatccctccagctctgcccaatatgttaaagcagttcactaaagcagcaataaggacacagcctcgtgatgtgctgcagtgggcagctgactatttttcagcattatccaaaggtcaggacctgccagtcaagaagaggctggaattgccagtggcgactcaaaagacagacacaggacttacaccaggccttctgaagatccttcatcaacagcttacatctaaagaaacagttacaaaagatgagcttcttcccaagtggaaagccctacacttgcctgtggaacagcttgacactatcctcgcacttggaaacttcagcgaaaacattaactggatgcagttttttgctttggcatgcagcgctttgggtgggagcatcacgagtgctttgaaacatgcatgtgaaatactcacagaggaccctgagggtggtccagcgcagattcctttccacatgtttcgcagtctgtacacatacttggcccatctggatggagaaattcctgaagaacagatcgacagtttcttgcacagtttagaagggcaagcacaaagccaaggaggaatggtgcaaccttcaaactttacaagcctccatactgctgagaagtaaaatccagatggccttcaagcactcaaaaatattgattctagttactgtgttctgtttttgccctctttatccggtataatgtggtgtgattgtattatttaaccccaaataaattctcgtatcttaaaaaaaaaaaaaaaaa

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