LOCUS       NM_001002624            1290 bp    mRNA    linear   VRT 29-JUL-2023
DEFINITION  Danio rerio claudin 11a (cldn11a), mRNA.
ACCESSION   NM_001002624
VERSION     NM_001002624.1
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 1290)
  AUTHORS   Zhang FL, Yang YL, Zhang Z, Yao YY, Xia R, Gao CC, Du DD, Hu J, Ran
            C, Liu Z and Zhou ZG.
  TITLE     Surface-Displayed Amuc_1100 From Akkermansia muciniphila on
            Lactococcus lactis ZHY1 Improves Hepatic Steatosis and Intestinal
            Health in High-Fat-Fed Zebrafish
  JOURNAL   Front Nutr 8, 726108 (2021)
   PUBMED   34722607
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1290)
  AUTHORS   Taylor A, Warner M, Mendoza C, Memmott C, LeCheminant T, Bailey S,
            Christensen C, Keller J, Suli A and Mizrachi D.
  TITLE     Chimeric Claudins: A New Tool to Study Tight Junction Structure and
            Function
  JOURNAL   Int J Mol Sci 22 (9), 4947 (2021)
   PUBMED   34066630
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1290)
  AUTHORS   Mitchell JM, Sucharov J, Pulvino AT, Brooks EP, Gillen AE and
            Nichols JT.
  TITLE     The alx3 gene shapes the zebrafish neurocranium by regulating
            frontonasal neural crest cell differentiation timing
  JOURNAL   Development 148 (7) (2021)
   PUBMED   33741714
REFERENCE   4  (bases 1 to 1290)
  AUTHORS   Weinberger M, Simoes FC, Patient R, Sauka-Spengler T and Riley PR.
  TITLE     Functional Heterogeneity within the Developing Zebrafish Epicardium
  JOURNAL   Dev Cell 52 (5), 574-590 (2020)
   PUBMED   32084358
REFERENCE   5  (bases 1 to 1290)
  AUTHORS   Sedykh I, Yoon B, Roberson L, Moskvin O, Dewey CN and Grinblat Y.
  TITLE     Zebrafish zic2 controls formation of periocular neural crest and
            choroid fissure morphogenesis
  JOURNAL   Dev Biol 429 (1), 92-104 (2017)
   PUBMED   28689736
REFERENCE   6  (bases 1 to 1290)
  AUTHORS   Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M,
            Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD,
            Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov
            GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W and
            Hertzano R.
  TITLE     RFX transcription factors are essential for hearing in mice
  JOURNAL   Nat Commun 6, 8549 (2015)
   PUBMED   26469318
  REMARK    Publication Status: Online-Only
REFERENCE   7  (bases 1 to 1290)
  AUTHORS   Baltzegar DA, Reading BJ, Brune ES and Borski RJ.
  TITLE     Phylogenetic revision of the claudin gene family
  JOURNAL   Mar Genomics 11, 17-26 (2013)
   PUBMED   23726886
REFERENCE   8  (bases 1 to 1290)
  AUTHORS   Cannon JE, Place ES, Eve AM, Bradshaw CR, Sesay A, Morrell NW and
            Smith JC.
  TITLE     Global analysis of the haematopoietic and endothelial transcriptome
            during zebrafish development
  JOURNAL   Mech Dev 130 (2-3), 122-131 (2013)
   PUBMED   23072875
REFERENCE   9  (bases 1 to 1290)
  AUTHORS   Hoffmann JL, Thomason RG, Lee DM, Brill JL, Price BB, Carr GJ and
            Versteeg DJ.
  TITLE     Hepatic gene expression profiling using GeneChips in zebrafish
            exposed to 17alpha-methyldihydrotestosterone
  JOURNAL   Aquat Toxicol 87 (2), 69-80 (2008)
   PUBMED   18339436
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC075960.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC075960.1, CK030079.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA4476820 [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1290
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /db_xref="taxon:7955"
                     /chromosome="2"
                     /map="2"
     gene            1..1290
                     /gene="cldn11a"
                     /gene_synonym="zgc:92247"
                     /note="claudin 11a"
                     /db_xref="GeneID:436897"
                     /db_xref="ZFIN:ZDB-GENE-040718-369"
     exon            1..372
                     /gene="cldn11a"
                     /gene_synonym="zgc:92247"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    75..77
                     /gene="cldn11a"
                     /gene_synonym="zgc:92247"
                     /note="upstream in-frame stop codon"
     CDS             147..794
                     /gene="cldn11a"
                     /gene_synonym="zgc:92247"
                     /codon_start=1
                     /product="claudin-11a"
                     /protein_id="NP_001002624.1"
                     /db_xref="GeneID:436897"
                     /db_xref="ZFIN:ZDB-GENE-040718-369"
                     /translation="

MANTCLQFTGFVMSFLGWIGLIVATATNEWVFTCKYQMNTCRKMDELEAKGLWADCVISTALYHCITLTQILELPAYIQTSRALMVTASILGLPAVVMVLMSMSCINLGGEPESAKNKRSVLGGILILLTAFCGIVSTVWFPIGAHHEKGLMSFGFSLYSGWVGTALCLLGGCIISCCSVDSPATYTENNRFYYSKQGPAHTGPTSTNHAKSAHV"

     misc_feature    162..668
                     /gene="cldn11a"
                     /gene_synonym="zgc:92247"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:473919"
     exon            373..537
                     /gene="cldn11a"
                     /gene_synonym="zgc:92247"
                     /inference="alignment:Splign:2.1.0"
     exon            538..1269
                     /gene="cldn11a"
                     /gene_synonym="zgc:92247"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

actttttacacaatggattaacacgcctggataccatcatctgatttattctaccaagttaacttgtttggctttagatcaacagattgtttaaaagtggacttttttttgcctgttggacactttttttgcgcacactgtacaccatggccaatacttgcttacagttcacgggttttgtgatgagttttctcggctggatcgggctaatcgtcgccactgccactaacgaatgggtcttcacctgtaaatatcaaatgaacacctgcaggaagatggatgaactggaggccaaggggttgtgggcagactgtgtgatctcaactgcgctttatcactgcatcacactcacgcagattctcgagcttccagcatacatccagacgtctcgagctctaatggtcacagcatcgattcttggattgcctgccgttgtgatggtgctcatgtccatgtcctgtattaaccttggaggtgaaccagaaagtgccaagaacaagcgatcagtgctcggaggaatcctaatactgctgacagctttctgtggcatcgtctccactgtgtggtttcccatcggggcccatcacgagaagggtctgatgtcctttggcttttctctgtattcaggatgggtggggacagctctctgtctgctgggaggctgtataatcagctgctgttcagtggacagtcctgctacatacactgaaaacaaccgattctactactccaaacaaggccctgcccacacaggccccacctccaccaaccacgccaaaagcgctcacgtctgagcttctggattacagatcagatctgatttccactcccttttttctctctctttcttatttcagccatgtttctttatagcggtgtctctttggatagtaatcataaagctgaactcactcgaaacaagggacaatcgctggtgaaggacctgcactgaaggatttgctgttcaagaagtcttctactgattctgctcatacagtgtcatttaaagttgtatttttgtagtaagaaatgtttttacgttgctatatgaatactaacagtatttgccagtgttgtttttcattctaaacttctcatgtttgtacagctgtattttcatttcagagcatttcagaataaccgatcagactagattgcaccaaaattggaccaaagcagtattatttagcaatattatttattgtagtacttgtatgcagttttatctctctgttttttttgtattaaacaatatcatccatgtgaaaaaaaaaaaaaaaaaaaaaaaaa

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