LOCUS       NM_075694               1670 bp    mRNA    linear   INV 11-JUN-2024
DEFINITION  Caenorhabditis elegans Homeobox domain-containing protein (ceh-93),
            mRNA.
ACCESSION   NM_075694
VERSION     NM_075694.10
DBLINK      BioProject: PRJNA158
KEYWORDS    RefSeq.
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 1670)
  AUTHORS   Sulson,J.E. and Waterston,R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282 (5396), 2012-2018 (1998)
   PUBMED   9851916
  REMARK    Erratum:[Science 1999 Jan 1;283(5398):35]
REFERENCE   2  (bases 1 to 1670)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-JUN-2024) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1670)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  TITLE     Direct Submission
  JOURNAL   Submitted (23-MAY-2024) WormBase Group, European Bioinformatics
            Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org
REFERENCE   4  (bases 1 to 1670)
  AUTHORS   Sulson,J.E. and Waterston,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger
            Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute
            at Washington University, St. Louis, MO 63110, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by WormBase. This
            record is derived from an annotated genomic sequence (NC_003284).
            
            On Feb 2, 2021 this sequence version replaced NM_075694.9.
FEATURES             Location/Qualifiers
     source          1..1670
                     /organism="Caenorhabditis elegans"
                     /mol_type="mRNA"
                     /strain="Bristol N2"
                     /db_xref="taxon:6239"
                     /chromosome="X"
     gene            1..1670
                     /gene="ceh-93"
                     /locus_tag="CELE_R04A9.5"
                     /db_xref="GeneID:180394"
     CDS             7..1533
                     /gene="ceh-93"
                     /locus_tag="CELE_R04A9.5"
                     /standard_name="R04A9.5"
                     /note="Partially confirmed by transcript evidence"
                     /codon_start=1
                     /product="Homeobox domain-containing protein"
                     /protein_id="NP_508095.5"
                     /db_xref="GeneID:180394"
                     /translation="

MNRSNEFEWKIPKLEEPENIQDVNLFEETEPEKFTKGYIKEELPDKICSTVRKVIKIPRSALEKVGVRLHDDEQKPTHLLSDDIKTEPIEEATHVNVIQTPSWKPKFQCISDLLKDDTTDFDCEMSLGSSVLFDRPDSSLPIKKICPGFPKKVGSIPSNKRIMSESQVRRELNASFARNCHPTAIGMQKLSERCGIRYKTIFDNFETIRKDGKIECETNDACCRIREFLSRETDTTSYIEITNEVQTVLEDEIELHLLSRKRFTLGYVHVIMEKTDLAPSYIRAQYENWRRKLSTKDRGSWKIGDSEAENSVLSAEVSKQLEEAFLQRTNNREDKTLRPKDIKALSTQLEINEKEIENWIAKKTEATSGSNSTEQQQKHNILRIFASCRRRLPKLNIEGLNKYFAKNNKPGVRQREKIAKKLGLSERQVRNYFNKKRITERKLKVWKDAPKDFLTLSKQTVDEMMKIAEERRKPNDEYIQIANRLGVSHITLCSFIDWQKSIYAGKAK"

     misc_feature    532..882
                     /gene="ceh-93"
                     /locus_tag="CELE_R04A9.5"
                     /note="Homeobox-cysteine loop-homeobox; Region: HOCHOB;
                     pfam17943"
                     /db_xref="CDD:407792"
     misc_feature    1171..1338
                     /gene="ceh-93"
                     /locus_tag="CELE_R04A9.5"
                     /note="Homeodomain; DNA binding domains involved in the
                     transcriptional regulation of key eukaryotic developmental
                     processes; may bind to DNA as monomers or as homo- and/or
                     heterodimers, in a sequence-specific manner; Region:
                     homeodomain; cd00086"
                     /db_xref="CDD:238039"
     misc_feature    order(1171..1176,1180..1182,1231..1233,1249..1251,
                     1288..1290,1294..1299,1306..1311,1315..1323,1327..1332)
                     /gene="ceh-93"
                     /locus_tag="CELE_R04A9.5"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(1177..1179,1297..1299,1306..1311,1318..1320)
                     /gene="ceh-93"
                     /locus_tag="CELE_R04A9.5"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
ORIGIN      

aatgcaatgaacagatcaaacgaatttgagtggaagattccaaaattggaggagcctgagaatattcaagatgtaaatttatttgaagaaactgaaccggaaaaatttacaaaaggatatatcaaagaagaacttcccgataagatttgctcaactgttcgaaaagtgattaaaattccacgatcggctctggaaaaggtgggagttcgtttgcatgatgatgaacaaaaacctactcatttgctatctgacgacataaaaacagaacctattgaagaagctacacatgtgaacgtcattcaaactccgagttggaaaccaaagtttcagtgcatttctgatcttctcaaagatgatacaactgattttgattgcgaaatgtcactgggaagttctgtgctgtttgatcgcccggattcgtctttgccaattaaaaagatctgtccaggattcccaaagaaagtgggaagtattccatccaacaaaaggatcatgtctgaaagccaagtgagacgagagttgaacgctagttttgcaagaaactgccacccaacagcgattggaatgcagaaactatccgaacggtgtggaatacgatacaagacaatttttgacaattttgagacaattagaaaagacggaaaaattgaatgtgagacaaatgacgcgtgttgtcgaattcgggagtttttgtctcgtgaaacggatactacttcctacatagaaattacgaacgaagtgcaaactgtattggaggacgagattgaacttcaccttctctcacggaaaaggttcactcttggatatgttcatgtgataatggagaaaactgacttagcaccttcctacattcgtgcacaatatgaaaactggagaaggaagctttcgacaaaggatcgtggatcgtggaaaatcggggatagtgaagcagaaaacagtgtattgtcagctgaagtttcaaaacaactcgaagaagcattcctgcaaagaacaaataaccgcgaggataaaacgctacgaccaaaagatatcaaggctctttcaactcaattggagattaatgaaaaagaaattgaaaattggattgctaagaaaactgaagcaacatcgggatcaaactctaccgagcagcagcaaaaacacaacattttgagaatctttgcatcttgtcgtaggagactgccaaaactgaatattgaagggttgaacaaatactttgcaaaaaacaacaagcctggtgtgagacaacgagaaaaaatcgcaaagaaactagggctcagtgaacgtcaagtcagaaactatttcaataagaagcggattaccgaaagaaaactgaaagtttggaaagatgcgccgaaggactttttaactctctctaagcaaacagttgatgaaatgatgaaaattgctgaggaacgaagaaaaccgaatgatgaatatattcaaattgcaaatcgtcttggagtttcccacatcaccctttgcagcttcatcgactggcaaaagtcgatatatgctggcaaggcaaagtgaataaatgtcagtcgtgacttttttataattgaatagttgtttttctttcaacaatttttttaattttgaatgatttccttttcctaaattttaagggtacaagtaattttttgagtttgaaataaacattgaaactt

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