2024-09-28 09:23:14, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_075691 3442 bp mRNA linear INV 11-JUN-2024 DEFINITION Caenorhabditis elegans Nuclear RNAi defective-3 protein (nrde-3), mRNA. ACCESSION NM_075691 VERSION NM_075691.7 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 3442) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK Erratum:[Science 1999 Jan 1;283(5398):35] REFERENCE 2 (bases 1 to 3442) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (11-JUN-2024) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3442) AUTHORS WormBase. CONSRTM WormBase Consortium TITLE Direct Submission JOURNAL Submitted (23-MAY-2024) WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 4 (bases 1 to 3442) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003284). On May 27, 2020 this sequence version replaced NM_075691.6. FEATURES Location/Qualifiers source 1..3442 /organism="Caenorhabditis elegans" /mol_type="mRNA" /strain="Bristol N2" /db_xref="taxon:6239" /chromosome="X" gene 1..3442 /gene="nrde-3" /locus_tag="CELE_R04A9.2" /db_xref="GeneID:180392" CDS 20..3193 /gene="nrde-3" /locus_tag="CELE_R04A9.2" /standard_name="R04A9.2" /note="Confirmed by transcript evidence" /codon_start=1 /product="Nuclear RNAi defective-3 protein" /protein_id="NP_508092.1" /db_xref="GeneID:180392" /translation="
MDLLDKVMGEMGSKPGSTAKKPATSASSTPRTNVWGTAKKPSSQQQPPKPLFTTPGSQQGSLGGRIPKREHTDRTGPDPKRKPLGGLSVPDSFNNFGTFRVQMNAWNLDISKMDERISRIMFRATLVHTDGRRFELSLGVSAFSGDVNRQQRRQAQCLLFRAWFKRNPELFKGMTDPAIAAYDAAETIYVGCSFFDVELTEHVCHLTEADFSPQEWKIVSLISRRSGSTFEIRIKTNPPIYTRGPNALTLENRSELTRIIEAITDQCLHNEKFLLYSSGTFPTKGGDIASPDEVTLIKSGFVKTTKIVDRDGVPDAIMTVDTTKSPFYKDTSLLKFFTAKMDQLTNSGGGPRGHNGGRERRDGGGNSRKYDDRRSPRDGEIDYDERTVSHYQRQFQDERISDGMLNTLKQSLKGLDCQPIHLKDSKANRSIMIDEIHTGTADSVTFEQKLPDGEMKLTSITEYYLQRYNYRLKFPHLPLVTSKRAKCYDFYPMELMSILPGQRIKQSHMTVDIQSYMTGKMSSLPDQHIKQSKLVLTEYLKLGDQPANRQMDAFRVSLKSIQPIVTNAHWLSPPDMKFANNQLYSLNPTRGVRFQTNGKFVMPARVKSVTIINYDKEFNRNVDMFAEGLAKHCSEQGMKFDSRPNSWKKVNLGSSDRRGTKVEIEEAIRNGVTIVFGIIAEKRPDMHDILKYFEEKLGQQTIQISSETADKFMRDHGGKQTIDNVIRKLNPKCGGTNFLIDVPESVGHRVVCNNSAEMRAKLYAKTQFIGFEMSHTGARTRFDIQKVMFDGDPTVVGVAYSLKHSAQLGGFSYFQESRLHKLTNLQEKMQICLNAYEQSSSYLPETVVVYRVGSGEGDYPQIVNEVNEMKLAARKKKHGYNPKFLVICTQRNSHIRVFPEHINERGKSMEQNVKSGTCVDVPGASHGYEEFILCCQTPLIGTVKPTKYTIIVNDCRWSKNEIMNVTYHLAFAHQVSYAPPAIPNVSYAAQNLAKRGHNNYKTHTKLVDMNDYSYRIKEKHEEIISSEEVDDILMRDFIETVSNDLNAMTINGRNFWA"
misc_feature 1172..1516 /gene="nrde-3" /locus_tag="CELE_R04A9.2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1310..1312,1355..1357,1397..1399,1409..1411, 1463..1465,1484..1486,1490..1492) /gene="nrde-3" /locus_tag="CELE_R04A9.2" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 2036..3022 /gene="nrde-3" /locus_tag="CELE_R04A9.2" /note="Piwi domain; Region: Piwi; pfam02171" /db_xref="CDD:396649" misc_feature order(2078..2080,2090..2092,2117..2128,2141..2143, 2180..2182,2189..2191,2201..2203,2213..2215) /gene="nrde-3" /locus_tag="CELE_R04A9.2" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:239208" misc_feature order(2333..2335,2339..2341,2573..2575,2987..2989) /gene="nrde-3" /locus_tag="CELE_R04A9.2" /note="active site" /db_xref="CDD:239208" ORIGIN
gtaatttgcacaactaatcatggatctcctagacaaagtaatgggtgagatgggctctaagccaggctcaactgccaaaaaaccagccacatctgcgtcatccacaccacgtacaaatgtttggggcactgcaaaaaagccatccagccaacagcagccaccgaagccacttttcactactccgggctcacagcaaggatctcttggaggtcggattccaaaaagagagcataccgatcgcacaggtcccgatccaaaacgaaagccactgggaggattgtcggtgccggattcattcaataattttggtacgtttcgggtacaaatgaatgcttggaatttagatatttctaaaatggacgagagaattagcagaataatgtttcgtgccacattggttcacacggatggacgtcgctttgaactttctcttggcgtttcggcattctccggagacgtcaaccgtcaacaaagacgtcaagctcaatgcctgctcttccgggcatggttcaaacgaaatcctgagctgttcaaaggtatgactgatccggcaatcgctgcatacgacgctgcggaaactatctatgtgggatgtagcttctttgacgtcgagttgaccgagcacgtatgccatctgacagaagctgacttttcgccacaagaatggaaaatcgtttctctcatctcacgtcggagtgggtcgacatttgaaattcgcatcaagacaaatccaccaatctacacgcgtggaccaaacgctttgacattggagaaccgttctgagctaacacgtatcattgaagctataacagaccaatgtcttcacaatgagaagtttttgctctattcgtcgggaactttccccacgaaggggggcgatattgccagtcccgacgaggttactctgattaagtcaggattcgtgaagactacaaaaattgtggatcgggacggtgtaccagatgcaattatgaccgttgacacaacaaaatcgccattctacaaagatacgtctctcctcaaatttttcactgccaaaatggatcaacttacaaatagtggtggaggacccagaggccacaatggtggcagagagcgtcgcgatggcggcgggaacagtagaaaatacgatgatagacgctcaccgcgtgatggtgaaattgattatgacgagagaactgtctcacattatcaaagacagtttcaagacgaacgcatttcggatggtatgctgaacactctcaagcagtctctcaaaggattggattgtcagccgattcatcttaaagactcgaaagccaatcgttcaatcatgatagacgaaattcacaccggaacagcagatagtgtcacatttgaacaaaaacttcccgacggagagatgaagctcacttccatcacagagtattatttacaacggtacaactatcgtctcaaattcccacatcttccgttggtgacttcaaaacgggcgaaatgttacgatttctatcctatggaactcatgtccattcttcctggccagagaatcaaacagtcacatatgactgttgatattcaatcttatatgactggaaaaatgagcagcctgcctgatcagcacatcaaacagtcgaaattggttttgacggaatatttaaaacttggtgaccagcctgcaaatcgccaaatggatgctttccgtgtgtcgctcaaaagcatccagccaattgtcacgaatgcccattggctctccccaccagacatgaagttcgcaaacaatcagctgtacagtctaaatccaacccgtggtgtgcgtttccagactaatggcaagtttgtcatgccagccagagtaaagtcggtgacgattatcaactacgacaaggaatttaatagaaacgtcgatatgtttgccgaagggcttgccaagcattgctccgaacaaggaatgaagtttgatagccgcccgaacagctggaaaaaagttaatctcggctcatcagaccgacgaggtacaaaagtggagatagaagaagccattcgaaacggcgttacgattgtgtttggaattattgccgaaaaacgaccagatatgcatgacattctcaaatactttgaggagaagcttggacagcaaaccattcaaatttcttctgaaaccgcggacaaattcatgcgtgaccatggtggaaaacaaaccattgacaatgtcatcagaaaattgaaccccaagtgtggaggaactaacttcctaattgacgtgcccgagtcggttggccatcgagtcgtttgcaacaattctgctgaaatgagagcaaaactgtacgcaaagacgcaatttatcggattcgagatgtcgcatacaggcgctaggaccagattcgacattcagaaagttatgtttgacggagatccaactgtcgtcggagttgcgtactctctcaaacacagtgctcagcttggagggttttcatatttccaggaaagtcgtttgcacaagctcacaaatcttcaagagaagatgcaaatttgcttgaatgcttacgagcaatcgagctcgtatcttcctgagacagttgttgtctatcgtgtcggaagtggtgaaggagattatccgcaaattgtcaacgaggttaacgagatgaagctggctgcaagaaagaagaagcatggttacaatcccaagtttctcgttatttgcacacaacgcaactctcacatccgagtattccctgaacacattaatgaacgtggaaagtccatggagcaaaatgtaaaatccggcacttgcgtcgatgtgccaggagcctctcacggatacgaggagttcattctttgttgccaaacacctctgattggaacagtaaaaccaacaaagtatactatcattgtcaacgattgtcgttggagcaagaatgagatcatgaatgtcacctaccacttggcgtttgcccaccaggtctcttatgcaccaccagctatccccaacgtgagctatgctgctcaaaatcttgctaaacgtggtcacaacaactacaaaacacacacaaagcttgtggacatgaacgactactcttatcgaatcaaggaaaaacatgaggaaatcatttcgtcagaggaagttgacgatattctgatgcgcgatttcattgagacagtttccaacgatctaaatgcaatgaccatcaacggacgcaacttttgggcataattgccgtttttccattatcattttgcaatctgtactcttttgccacctcatcctgttttttttttcaaatctctatcaactgctcactttgccttacaattcttgatatcaaactctcatccccttatactttaagaagtgtcaatgttgtttttttactatttattcattatgtattccttatttctaacactatgaacttcaatattaatttttttaaccaaccaataaattcatggtttaccaggg
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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