2024-09-28 09:23:24, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_074058 1036 bp mRNA linear INV 11-JUN-2024 DEFINITION Caenorhabditis elegans 7TM GPCR serpentine receptor class x (Srx) domain-containing protein (srx-10), partial mRNA. ACCESSION NM_074058 VERSION NM_074058.4 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 1036) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK Erratum:[Science 1999 Jan 1;283(5398):35] REFERENCE 2 (bases 1 to 1036) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (11-JUN-2024) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1036) AUTHORS WormBase. CONSRTM WormBase Consortium TITLE Direct Submission JOURNAL Submitted (23-MAY-2024) WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 4 (bases 1 to 1036) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003283). On Sep 4, 2019 this sequence version replaced NM_074058.3. COMPLETENESS: incomplete on the 5' end. FEATURES Location/Qualifiers source 1..1036 /organism="Caenorhabditis elegans" /mol_type="mRNA" /strain="Bristol N2" /db_xref="taxon:6239" /chromosome="V" gene <1..1036 /gene="srx-10" /locus_tag="CELE_R10D12.4" /db_xref="GeneID:187761" CDS 1..948 /gene="srx-10" /locus_tag="CELE_R10D12.4" /standard_name="R10D12.4" /note="Partially confirmed by transcript evidence" /codon_start=1 /product="7TM GPCR serpentine receptor class x (Srx) domain-containing protein" /protein_id="NP_506459.3" /db_xref="GeneID:187761" /translation="
MFKTAAGYFFFQLCLIGFVINMGVLVPLRRVQKNGDKNCVYLIAIVTILNDNINLLVNLCYFAPSIISDSYILADSPEKLGPMLMTRISHFSWYNTIFVMIVMALNRMTLVVLNKPNIFTKQRVLTYFFISSILSFSKVVFDVFLIPCCLVLMDHKKYGWTYYNPKNIKNWGELIDTIMEVGIFTATLLCYVIIFIKIRISNNSVEQSIDSKHFQKLRARERSVAVQFALVSIFSIISFASFKVVPMIFGKLNTESNIISPICFAVHCCANGCIYMFMNEEVKDELLKKIFKHNVVHTESNNPNGVPAEDPQLFF"
misc_feature 31..744 /gene="srx-10" /locus_tag="CELE_R10D12.4" /note="seven-transmembrane G protein-coupled receptor superfamily; Region: 7tm_GPCRs; cl28897" /db_xref="CDD:475119" misc_feature 367..444 /gene="srx-10" /locus_tag="CELE_R10D12.4" /note="TM helix 4 [structural motif]; Region: TM helix 4" /db_xref="CDD:410626" misc_feature 517..579 /gene="srx-10" /locus_tag="CELE_R10D12.4" /note="TM helix 5 [structural motif]; Region: TM helix 5" /db_xref="CDD:410626" misc_feature 655..738 /gene="srx-10" /locus_tag="CELE_R10D12.4" /note="TM helix 6 [structural motif]; Region: TM helix 6" /db_xref="CDD:410626" misc_feature 769..837 /gene="srx-10" /locus_tag="CELE_R10D12.4" /note="TM helix 7 [structural motif]; Region: TM helix 7" /db_xref="CDD:410626" ORIGIN
atgttcaaaacggctgccggctacttcttctttcagttatgtttgatcggctttgtaatcaatatgggagtccttgtccctctgagaagagttcagaaaaatggagataaaaactgtgtttacttgattgccatagtaacgattttgaatgataacatcaatttgttggtcaatctatgctattttgccccatcaattatttcagatagctacattcttgctgattcccctgaaaaactcggaccaatgctaatgacaagaatatcgcatttcagttggtacaacaccattttcgtaatgattgtaatggcattaaatcgaatgacactagttgttttaaacaaacctaacatcttcacaaaacagcgtgttctaacctactttttcatttcttcaattttatctttttccaaagtggttttcgatgtcttcctgattccatgctgtttggtgcttatggatcataaaaaatatggatggacttattacaatccaaaaaatataaaaaattggggagaattaattgacacaattatggaagttggaatttttacagcgacactcttatgctatgttataattttcataaaaatccgaatttcaaataactctgtggaacagtcaattgactcaaaacattttcaaaaacttcgtgctcgagaacgatcggttgcggtacaattcgctttggtttcaattttctcaattatcagttttgcgtcattcaaagtggttccaatgatttttggtaaactgaatactgaaagtaatattatcagtccaatttgttttgctgttcactgttgtgccaatggatgtatctacatgtttatgaatgaagaggtgaaagacgaattattgaagaaaatattcaagcacaatgtggttcacacggaatccaataatccaaatggagtgccagcagaagatccccaattatttttttgaagagctttgacaagctcagtatgtgatgttatctttggtttatttttgcctatttaattttaataaataaccatcaaaaagaacaaat
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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