2024-09-28 09:28:57, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_068104 777 bp mRNA linear INV 11-JUN-2024 DEFINITION Caenorhabditis elegans RRM domain-containing protein (rnp-3), mRNA. ACCESSION NM_068104 VERSION NM_068104.6 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 777) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK Erratum:[Science 1999 Jan 1;283(5398):35] REFERENCE 2 (bases 1 to 777) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (11-JUN-2024) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 777) AUTHORS WormBase. CONSRTM WormBase Consortium TITLE Direct Submission JOURNAL Submitted (23-MAY-2024) WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 4 (bases 1 to 777) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003282). On Sep 4, 2019 this sequence version replaced NM_068104.5. FEATURES Location/Qualifiers source 1..777 /organism="Caenorhabditis elegans" /mol_type="mRNA" /strain="Bristol N2" /db_xref="taxon:6239" /chromosome="IV" gene 1..777 /gene="rnp-3" /locus_tag="CELE_K08D10.3" /db_xref="GeneID:177182" CDS 7..660 /gene="rnp-3" /locus_tag="CELE_K08D10.3" /standard_name="K08D10.3a" /note="Confirmed by transcript evidence" /codon_start=1 /product="RRM domain-containing protein" /protein_id="NP_500505.1" /db_xref="GeneID:177182" /translation="
MADINPNHTIYVNNLNEKVKKDELKRSLHMVFTQFGEIIQLMSFRKEKMRGQAHIVFKEVSSASNALRALQGFPFYGKPMRIQYAREDSDVISRAKGTFVEKRQKSTKIAKKPYEKPAKNGKSAAEPTQKEPQETDGPGLPNNILFCSNIPEGTEPEQIQTIFSQFPGLREVRWMPNTKDFAFIEYESEDLSEPARQALDNFRITPTQQITVKFASK"
misc_feature 31..264 /gene="rnp-3" /locus_tag="CELE_K08D10.3" /note="RNA recognition motif 1 (RRM1) found in the U1A/U2B'/SNF protein family; Region: RRM1_U1A_like; cd12246" /db_xref="CDD:409692" misc_feature order(37..39,43..48,55..57,130..132,136..138,142..150, 154..162,166..168,238..240,247..249,253..264) /gene="rnp-3" /locus_tag="CELE_K08D10.3" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:409692" misc_feature 427..642 /gene="rnp-3" /locus_tag="CELE_K08D10.3" /note="RNA recognition motif 2 (RRM2) found in the U1A/U2B'/SNF protein family; Region: RRM2_U1A_like; cd12247" /db_xref="CDD:409693" ORIGIN
gttaaaatggccgacatcaacccgaatcacacgatctatgtgaacaatctcaatgagaaagtcaagaaagatgaactcaaacgctctcttcacatggttttcacacaattcggtgaaataattcagctaatgtcatttcgaaaggaaaaaatgcgcggacaagcacatatcgtcttcaaagaggtctcatcagcgtcaaatgctcttcgagccctgcaaggattcccattttatggaaaaccaatgagaattcaatatgcaagagaggattctgatgtgatttctcgtgccaaaggaacttttgtcgaaaaacgacaaaaatccacgaaaatcgccaaaaaaccatatgaaaaaccggcgaaaaatggaaaatcggcagcggagccgactcaaaaggagccgcaggagactgacggaccaggattgccgaataatattcttttctgctcgaatattccagaaggaaccgagccagaacagattcagaccattttcagccaattcccaggacttcgtgaggttcgctggatgccaaacaccaaggattttgcatttatcgaatacgaatccgaagatctttcagagccagcacgtcaagctctcgacaatttcagaattactccaactcagcagattactgtcaaatttgccagcaaataggcacggaaattggccccgaaaatcgcctaatttattgattttttttcgcatctgaatctcattttctcatgttttatgtgtgtttttcccgattttctatgaattttggtaattttc
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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