2024-09-28 09:27:34, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_064467 1195 bp mRNA linear INV 11-JUN-2024 DEFINITION Caenorhabditis elegans D-3-phosphoglycerate dehydrogenase (phdh-1), mRNA. ACCESSION NM_064467 VERSION NM_064467.6 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 1195) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK Erratum:[Science 1999 Jan 1;283(5398):35] REFERENCE 2 (bases 1 to 1195) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (11-JUN-2024) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1195) AUTHORS WormBase. CONSRTM WormBase Consortium TITLE Direct Submission JOURNAL Submitted (23-MAY-2024) WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 4 (bases 1 to 1195) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003280). On Sep 4, 2019 this sequence version replaced NM_064467.5. FEATURES Location/Qualifiers source 1..1195 /organism="Caenorhabditis elegans" /mol_type="mRNA" /strain="Bristol N2" /db_xref="taxon:6239" /chromosome="II" gene 1..1195 /gene="phdh-1" /locus_tag="CELE_C31C9.2" /db_xref="GeneID:175012" CDS 2..970 /gene="phdh-1" /locus_tag="CELE_C31C9.2" /standard_name="C31C9.2a" /note="Confirmed by transcript evidence" /codon_start=1 /product="D-3-phosphoglycerate dehydrogenase" /protein_id="NP_496868.1" /db_xref="GeneID:175012" /translation="
MSAPINKVLIADDIEQECVDILKQNGIEVTVKTKQTKDELLVTLPQHDAVIVRSATKITAELLAASAGKLKLVGRAGTGVDNIDVPAASANKILVMNTPQANSRSAAELTCTLILSLSRHVPQAAASMKAGKWARKDFMGEEVYGRTLAVLGLGRIGSEVAVRLQAFGMKVIGFDPMVTKEQAEAKNIELLSLEQIWPQADYITVHVPLIKQTENLINKETLAKCKKGVRIINVARGGIVNEVDLVESLNAGHAKGAAFDVFEQEPPTFRELIDHPLVIATPHLGASTIDAQLRVASEIADNIVQYNKGTMLGVLNAREVLN"
misc_feature 20..928 /gene="phdh-1" /locus_tag="CELE_C31C9.2" /note="Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains; Region: PGDH_4; cd12173" /db_xref="CDD:240650" misc_feature order(158..163,224..226,230..235,305..307,707..709, 848..850,857..859,875..877) /gene="phdh-1" /locus_tag="CELE_C31C9.2" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:240650" misc_feature order(233..235,305..307,317..319,455..457,461..469, 521..532,617..625,638..640,701..709,779..784,848..850, 854..859) /gene="phdh-1" /locus_tag="CELE_C31C9.2" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:240650" misc_feature order(311..316,323..328,332..337,344..349,356..358, 362..367,371..376,383..388,392..400,404..406,413..433, 437..439,488..490,497..502,785..787,794..802,815..829, 833..856,860..871,881..883) /gene="phdh-1" /locus_tag="CELE_C31C9.2" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:240650" ORIGIN
aatgagcgccccaatcaacaaagtcctcatcgccgacgacatcgagcaggagtgtgtcgacattctgaagcagaacggaatcgaggtgaccgtgaagacgaagcagacgaaggacgagcttctcgtcaccttgccacagcacgacgccgtcattgttcgcagcgccacgaagatcaccgccgagctgttggctgcatcagctgggaagctgaagcttgttggaagagccgggactggagttgacaatatcgatgtgccagccgcatcggcgaacaagattctcgtgatgaatacaccacaagccaactcccgttctgccgccgagctcacgtgcacactcattctctccctctcccgccacgttccacaagccgccgcatcgatgaaggccggcaaatgggcccgcaaggatttcatgggagaggaggtctacggacgcaccctagccgttctcggcctcggacgaattggatctgaggtggccgtcaggcttcaggcctttggaatgaaggttattggatttgatccaatggtcacgaaggagcaggctgaggcgaagaacattgagctgctctcgttggagcagatttggccacaggccgattatattacggtccacgtaccgctgatcaagcagactgagaatttgatcaataaagagaccctcgcgaaatgcaaaaaaggagtccgtatcatcaacgtggcgcgtggaggaattgtgaacgaggtcgacctggtggaatccctgaacgctggacacgccaagggagcagcattcgacgtgtttgagcaagaaccaccaacgttcagagagctcatcgatcatccactcgtcattgcgacaccacatctcggagcatcaacgattgacgcgcagctccgtgtcgcatcggaaatcgccgataacattgtgcagtacaataagggaactatgctcggagttttgaacgcacgagaggtgctcaactaatttatttgtgtgtttatttgaattttcgcccatattttctgtttatacgagatcattttacatttttacaatacattttttgtgagtttaagtcgttttcgcatacaaccattttttttcagttttattcataaaaatacataagaaaatcgataaaaaaccaacaaaaaaaaaattatcctcctcgagaccaccaccattctgaaataaaaagagtctagtaaa
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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