2024-09-29 09:44:16, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_064350 3369 bp mRNA linear INV 11-JUN-2024 DEFINITION Caenorhabditis elegans Argonaute protein wago-4 (wago-4), mRNA. ACCESSION NM_064350 VERSION NM_064350.6 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 3369) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK Erratum:[Science 1999 Jan 1;283(5398):35] REFERENCE 2 (bases 1 to 3369) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (11-JUN-2024) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3369) AUTHORS WormBase. CONSRTM WormBase Consortium TITLE Direct Submission JOURNAL Submitted (23-MAY-2024) WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 4 (bases 1 to 3369) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003280). On Sep 4, 2019 this sequence version replaced NM_064350.5. FEATURES Location/Qualifiers source 1..3369 /organism="Caenorhabditis elegans" /mol_type="mRNA" /strain="Bristol N2" /db_xref="taxon:6239" /chromosome="II" gene 1..3369 /gene="wago-4" /locus_tag="CELE_F58G1.1" /db_xref="GeneID:174932" CDS 27..2924 /gene="wago-4" /locus_tag="CELE_F58G1.1" /standard_name="F58G1.1" /note="Confirmed by transcript evidence" /codon_start=1 /product="Argonaute protein wago-4" /protein_id="NP_496751.1" /db_xref="GeneID:174932" /translation="
MPALPPVYTPSGAPSSVHAPPAVPPVPVPTQPLRSEYQTSNDACIKRLEELNIAPAAKLYPTPTEPGKCGVEAEIQTNVFGIEMHQDSLFYQYSVNITTELKNGKEVTFTKKGKDDFVVTERHDKCCAILFRALGDYEEFFKTSDSCLIYDGQSILFSNVDLFQGFREGAVKTKYMQLDGGEMDHKDLKSLPCIKLEVFPTKNPAVKFTREAVARRATDSNLDSVSLAYQQILELALTQPCLRNTARYVVFDHGKMFFIDPLGEGFEKCDVVDVGDGKQVVPGLKKTINFIEGPYGRGRSNPSVVIDGMKVAFHKNQPILDKLKEITTQPVEHGLKGLEKDRCAAVIKGLDCYSTYGGRERHHKIEGIHHEGARNARFELNDGGSCTVAQYFEDVYNITLRYPDTNLIVSKERGNINFYPMELLKISSHQRVQIPQLTSAQSQKTTKESAVLPDVRQRLILTGKNAAQISSDNEVLGKMGVSVCEDPLMVKGRSIPAVKLANAEIGANPINVKDNKWRANRFTRPATAPNVWAMYVVGTASTRITLDTLKKFADEFAAMCKSKGVNMPAPADISLIHMDAIESRLYDATKANCTFVFIITDDSITTLHQRYKMIEKDTKMIVQDMKLSKALSVINAGKRLTLENVINKTNVKLGGSNYVFVDAKKQLDSHLIIGVGISAPPAGTKYAMENKGVLNPNVIGYAYNAQHNQEFSGDFVLNSASQDTLAPIEDIVMHSLNEYQKFHDGGLPRRVIVYRTGTSEGNHGSIMAYEIPLARAAMRDFSPDIQLVYIVVSKDHSFRFFKPDLASLASRPQATSSTASRHSAMPAAPKAWDLNIAPGILVDSIVTNPACKQFFLNSHITLQGTAKTPLYTVLADDAKVSMTALEDITYKLCHLHQIVGLPTSLPTPLYVANEYAKRGRNLWNEAVALNNVPTVSGPEADRLKELTKSICYKASGDLTGRRVNA"
misc_feature 225..2717 /gene="wago-4" /locus_tag="CELE_F58G1.1" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 972..1304 /gene="wago-4" /locus_tag="CELE_F58G1.1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1113..1115,1158..1160,1188..1190,1200..1202, 1254..1256,1275..1277,1281..1283) /gene="wago-4" /locus_tag="CELE_F58G1.1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1806..2798 /gene="wago-4" /locus_tag="CELE_F58G1.1" /note="Piwi domain; Region: Piwi; pfam02171" /db_xref="CDD:396649" misc_feature order(1848..1850,1860..1862,1893..1904,1911..1913, 1947..1949,1956..1958,1968..1970,1980..1982) /gene="wago-4" /locus_tag="CELE_F58G1.1" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:239208" misc_feature order(2052..2054,2058..2060,2292..2294,2763..2765) /gene="wago-4" /locus_tag="CELE_F58G1.1" /note="active site" /db_xref="CDD:239208" ORIGIN
aggtaatagttacaaaatcgagaaggatgccagctcttcctccagtctacacgccttctggagctccatcgagcgtccacgcaccacctgccgttccaccagttccagttccgactcaaccgttaagatcggagtatcaaacgtctaacgacgcttgcatcaagagactggaagagcttaatattgctcctgctgcaaagctctatccaacacctactgaaccaggaaagtgtggcgtcgaggccgaaatacagaccaacgtattcggaatcgagatgcaccaggattcgttgttctatcagtacagcgtgaacatcacgacggagctgaaaaacgggaaagaagttaccttcactaagaaggggaaggatgacttcgtcgttactgagagacacgacaagtgctgtgcgattctgttccgcgcgctgggtgactatgaggagttcttcaaaacgtctgatagctgcctcatctacgatggtcaaagcattctgttctcaaacgtggatcttttccaagggttcagagaaggcgcagtaaagaccaagtacatgcagcttgatggcggagaaatggatcataaggatctcaaatcgttgccgtgtattaagctggaggtgttcccgactaaaaacccagcggtcaagttcacacgagaagccgtagcaagacgagcaacggactcaaacctcgattctgtcagcttggcttaccaacagatcctggaactcgctctcactcaaccatgtcttcgcaacactgcgagatacgttgttttcgatcatggaaaaatgtttttcattgatccactcggtgaaggattcgagaaatgcgacgttgtggacgttggggatgggaagcaagttgtaccaggactcaagaagacgatcaacttcatcgaaggaccctacggcagaggacggagtaatccatcagttgtcattgacgggatgaaggtcgctttccataagaatcagccaattctcgacaaactgaaggagataactacgcagcctgtggaacacggcctgaagggactcgaaaaggaccgctgcgcagccgtcatcaaagggctcgactgctattctacatatggcggtcgtgaacgtcatcacaagatcgagggaatccatcacgaaggggctcgaaatgctcgtttcgagctcaacgacggtggaagctgcactgtagctcaatatttcgaagacgtatacaacatcactcttcgctatccagacacaaatctcatcgtttccaaggagagaggaaatataaacttctacccgatggaattgttgaagatcagctctcatcaacgcgttcagatcccgcagctaaccagtgcccagagtcagaagacaacgaaggaaagtgctgttttacctgacgttcgccagcgtctgatcttgacgggaaaaaatgcggcgcaaatctcatcggacaacgaggttctcggtaaaatgggcgtctcggtgtgcgaagatccgctcatggtcaaaggacgctcaattcctgcggtgaagttggcaaacgctgaaattggagccaatccaatcaatgtcaaggacaacaagtggcgtgccaaccgcttcactcgaccagccacggcgccgaatgtgtgggcgatgtatgttgtcggtaccgcatcaactcgcataactttggatactctgaagaaattcgcagatgagttcgcggctatgtgcaagtcaaaaggtgtcaacatgcctgctcctgctgacatttcgctcatccatatggatgccatcgagagtcgtctgtacgacgcaacgaaagccaattgcacattcgttttcatcataacggatgattcaatcactacactccatcagcgttacaaaatgattgagaaggatacgaagatgatcgttcaagacatgaagctatccaaggcgttgagtgttatcaatgcaggaaagaggctaactctcgagaacgtgatcaacaagaccaatgtgaagttgggaggttccaactatgttttcgtggacgccaagaagcagctcgactctcatctgatcatcggagttgggatttccgccccacctgctggaaccaagtatgccatggagaacaaaggagttctaaaccccaatgtcatcggctatgcgtacaatgcacagcacaatcaggagttcagtggagacttcgtgttaaactctgccagccaagatactcttgcgccgattgaggatattgtgatgcactcgctcaacgaataccagaagtttcatgatggcggtcttccgagacgcgtcattgtctaccgaacaggaacaagcgagggaaatcatggatcaatcatggcctacgagattcctcttgctcgtgctgctatgagagatttctcacctgatattcaacttgtatacattgtggtgtcaaaggatcacagcttcagattcttcaagcccgatttggcaagtctagcttcccgtccacaagcgacttccagcaccgcaagcaggcattctgcaatgccagccgccccaaaagcatgggatctgaatattgcacccggtattttggtcgattccatcgtgacaaatccggcttgcaagcagtttttcctgaattcccacatcactctgcaaggaactgcgaagactccattgtacacagttctcgccgatgacgccaaagtcagcatgacagctttggaggatatcacgtacaagctgtgccatcttcaccagatcgttggacttccgacgtcgcttccaactccattgtacgtcgccaacgagtacgccaagagaggacgcaatctgtggaacgaggcagtggccttgaacaacgttccaactgtttctggcccggaagcagatcgtctcaaggagttgaccaagagcatctgctacaaagcgtccggagatctcacgggtcgtcgtgtcaacgcatgatcactttcaacaaggcaaactttgtttctttaaccacctcaacccttccctgctgttccattatttccttgtccctattgcaattgtttttgaacaactaataaccctttcccacctgtaccatttcacattgttactcttacaccacgtttataaccgcatagttttcccaatgtattaatattgcccattcttgttatatcatacttatattgtcccctgttattcacttcccttgtcaaatatttccttttttcagcaacttgtcatcgcaatttcttttctcgttgaaattacgctgacaagtgtgctctgtggcctttttctttttttttttcatttgttttcttgtactaacttctcgaaacatcagaagatgtttcgagaatttagttttgaatactaatataggcactgaaaacttaataaaagttgatagccgtcg
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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