2024-09-28 09:25:57, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_060391 1495 bp mRNA linear INV 11-JUN-2024 DEFINITION Caenorhabditis elegans peptidylprolyl isomerase (fkb-7), mRNA. ACCESSION NM_060391 VERSION NM_060391.4 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 1495) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK Erratum:[Science 1999 Jan 1;283(5398):35] REFERENCE 2 (bases 1 to 1495) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (11-JUN-2024) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1495) AUTHORS WormBase. CONSRTM WormBase Consortium TITLE Direct Submission JOURNAL Submitted (23-MAY-2024) WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 4 (bases 1 to 1495) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003279). On Sep 4, 2019 this sequence version replaced NM_060391.3. FEATURES Location/Qualifiers source 1..1495 /organism="Caenorhabditis elegans" /mol_type="mRNA" /strain="Bristol N2" /db_xref="taxon:6239" /chromosome="I" gene 1..1495 /gene="fkb-7" /locus_tag="CELE_B0511.1" /db_xref="GeneID:172963" CDS 152..1108 /gene="fkb-7" /locus_tag="CELE_B0511.1" /standard_name="B0511.1" /note="Confirmed by transcript evidence" /codon_start=1 /product="peptidylprolyl isomerase" /protein_id="NP_492792.1" /db_xref="GeneID:172963" /translation="
MTPLFIFLVLLTSQVLGGLNNGASSKNVGGRRQPTGGGGLDENIPVIEIRGEGAPMSSAQIRHLEEMDNGGPLDIKIEKTFVPAKCPQQAKRLDFVTFHYKVFTEDNKKVYQTYGTGPVTIQLGTGMIMPGLDKGLKGMCAEELRKVRVPYRMSRKSKSKVWKNIPNDENWLIFNIEMVEIKPYTPEIQFKFLDLNEDEQLTNKEVQDFQKKMKKEFGKTWKNEDIDNVTAAGYYIKYFDVNGDGIVTEVEWLKIMDRDEKLINDKKTKEKGRKRDPGIGWILDFDNDGIVSYKENDEAADRFDAGPTLLPMESKDEL"
misc_feature 407..688 /gene="fkb-7" /locus_tag="CELE_B0511.1" /note="FKBP-type peptidyl-prolyl cis-trans isomerase; Region: FKBP_C; pfam00254" /db_xref="CDD:459735" misc_feature <716..913 /gene="fkb-7" /locus_tag="CELE_B0511.1" /note="EF-hand, extracellular calcium-binding (EC) motif, found in secreted protein acidic and rich in cysteine (SPARC)-like proteins; Region: EFh_SPARC_EC; cl25349" /db_xref="CDD:330171" misc_feature order(731..733,743..745,764..766,869..871,875..877, 881..883,902..904) /gene="fkb-7" /locus_tag="CELE_B0511.1" /note="Ca binding site [ion binding]; other site" /db_xref="CDD:320009" misc_feature 806..913 /gene="fkb-7" /locus_tag="CELE_B0511.1" /note="EF-hand motif [structural motif]; Region: EF-hand motif" /db_xref="CDD:320009" ORIGIN
actcggaattgaacaaggtcgtcatgttcagtcactttcctttgtgtctcggaatctcttgtgtctgtggaaaggaatacatatcctccatattcttgtattataataagtggttgtcactgtctcatacagtccactcgtatttcaccatatgacacctttattcatattcttagttctactaacttcacaagttcttggtggtctgaacaatggagcatcctcgaagaatgtaggtgggagaaggcagccaactggtggaggaggacttgatgaaaatattcctgtaattgaaattcgaggagaaggagctccgatgagctcagctcaaattagacatttagaggagatggataatggtggtccattggatattaagatcgaaaaaacgtttgtgccagccaagtgccctcaacaagcaaaacgactggactttgtaactttccattacaaggtgttcacagaagataacaaaaaagtatatcaaacatatggaactggtccagtcacaattcaacttggaactggaatgattatgccaggacttgataagggtctgaaaggaatgtgtgcagaagagcttcgaaaagtccgtgtaccatatcgtatgagcagaaagagcaagagcaaggtgtggaaaaatataccgaatgatgaaaactggctgatttttaacattgaaatggtcgagatcaagccatacaccccagagattcagtttaaatttttggatttgaatgaggatgaacagttgacaaataaagaggttcaagatttccaaaagaaaatgaaaaaagaatttggaaagacatggaagaatgaggatattgacaatgtcactgctgctggttattatatcaaatatttcgatgtgaatggagatggaattgtgacagaagttgaatggctgaaaattatggatcgagatgagaaacttatcaatgataagaaaacaaaagaaaagggacgaaagagagatcctggaattggatggattttggattttgataatgacggaattgtttcttataaggaaaatgatgaagctgctgatcgatttgatgcagggccaacacttttgccaatggaatcaaaggatgaactctaataaattaaatttcgttttgttgactaataaaataactgttttgaagttgatataatagttgtagtaattttttgtagagtcggacctttacgggaaaacctttttgtaaatttctaacccaaaaacattcgattcaaagttttccaataactatcatgaaaaggaagtaaattctatgaaaaaatatgaagaaaaatagaaattggaaatcaatctgtagtgccttgtcgtgtctcaaagtctatgaaaaattgataaaagtctgtatgtggtgttttaattgtcttgtttatcaataatttttctgaacaatttattattattattatgattgaaccgggcaaattccaacatttcccgtgcttaataaactccgaaaattttgat
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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