2024-09-29 09:30:39, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_058357 2890 bp mRNA linear INV 11-JUN-2024 DEFINITION Caenorhabditis elegans Piwi domain-containing protein (sago-2), mRNA. ACCESSION NM_058357 VERSION NM_058357.4 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 2890) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK Erratum:[Science 1999 Jan 1;283(5398):35] REFERENCE 2 (bases 1 to 2890) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (11-JUN-2024) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2890) AUTHORS WormBase. CONSRTM WormBase Consortium TITLE Direct Submission JOURNAL Submitted (23-MAY-2024) WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 4 (bases 1 to 2890) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003279). On Sep 4, 2019 this sequence version replaced NM_058357.3. FEATURES Location/Qualifiers source 1..2890 /organism="Caenorhabditis elegans" /mol_type="mRNA" /strain="Bristol N2" /db_xref="taxon:6239" /chromosome="I" gene 1..2890 /gene="sago-2" /locus_tag="CELE_F56A6.1" /db_xref="GeneID:171653" CDS 48..2711 /gene="sago-2" /locus_tag="CELE_F56A6.1" /standard_name="F56A6.1a" /note="Confirmed by transcript evidence" /codon_start=1 /product="Piwi domain-containing protein" /protein_id="NP_490758.1" /db_xref="GeneID:171653" /translation="
MEKQLKAMSVSDKPAAPAAQKLGTAPLAAKKTRNEEWGTKVNIDTNIRKLTIKPNQPIYKYAVQVNYVFRKPDGTEATIEMSKSAKKGTEHDNDKTRCQNVYNEAIKRYDELKTGGPFFYDRQASLYTLTKLKNESISFVVTDKICKRQNFKEAQFVLKKVDQSFQSTSNDVIKTTNSCPANADKTLLEAMNIIVSGPAFENKNVITVGACVHYLIDPTGVDVAYKEYPEGQLYSGVGVSKSVKTLEGTDKKVPSLFMTTEMKTTLFHPDYAPLVELLQTFRGFSTTLKANSPAAQRIEKAFVGLDVVLNYGVHKGLGEDGVVMKIRRFHTSAKETCFEVEKSTREFTNVFDYFKKKYGITLKYPDLFTIEAKGKQGKIHFPAEVLLLCPNQTVTNDQMINNEQADMIKMSAAQPHIRKTTTDTIVRNVGLASNNIYGFIKVEDPVNLEGMVLPKPKIAFAGNRLADLANPKSRFPTDFNRAGQYYDAKELTKWELVFVQNEEVQGLAKQLADEMVNNGMKCSNPTMSFIIRGDLEPIFKKAKAAGTQLLFFVVKSRYNYHQQIKALEQKYDVLTQEIRAETAEKVFRQPQTRLNIINKTNMKLGGLNYAIGSEAFNKPNRLIVGFVTSQRVGGNPDYPISVGFAANMLKHHQKFAGGYVYVHRDRDVFGSIIKDTLLTIFKTCTEQRGRPDDILLYFNGVSEGQFSMINEEFSARVKEACMAFQKEGTPPFRPHITIIASSKAHNERLYKSDKGRIVNLEPGTVVDHTIVSNVYTEWYHASAVARQGTAKATKFTLIFTTKAGPQAEPLWHLEQLTNDLCYDHQIVFHPVGLPVPLYIADRYSQRGAMVLAANQGPIYNEGQIDLAATNSAYGYGEKKLFTTRFNA"
misc_feature 861..1214 /gene="sago-2" /locus_tag="CELE_F56A6.1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1017..1019,1059..1061,1095..1097,1107..1109, 1161..1163,1182..1184,1188..1190) /gene="sago-2" /locus_tag="CELE_F56A6.1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1377..2594 /gene="sago-2" /locus_tag="CELE_F56A6.1" /note="PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component...; Region: Piwi-like; cd02826" /db_xref="CDD:239208" misc_feature order(1728..1730,1740..1742,1773..1784,1791..1793, 1821..1823,1830..1832,1842..1844,1854..1856) /gene="sago-2" /locus_tag="CELE_F56A6.1" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:239208" misc_feature order(1926..1928,1932..1934,2142..2144,2568..2570) /gene="sago-2" /locus_tag="CELE_F56A6.1" /note="active site" /db_xref="CDD:239208" ORIGIN
attctcaccgaatatcaatttttattcattccagagtctctcgaactatggaaaaacaactaaaagctatgtccgtctcggacaaacctgctgccccagctgcccaaaagcttggtaccgctccgctcgctgcaaaaaagacgagaaatgaggagtggggaaccaaggtcaatatcgataccaacattcgcaaattgacgatcaaaccgaatcagccaatttacaagtacgctgtgcaagtgaactacgtcttccggaaacctgatggaactgaggcgacaatcgaaatgtccaaatcagccaaaaagggaacggagcacgacaacgacaaaacacgctgccagaacgtttacaatgaggcgatcaagcgttacgatgagctgaaaaccggaggaccgtttttctacgatcgtcaagcctctttgtacactctgaccaaattgaagaatgagagcatctctttcgttgttactgacaagatttgcaagcgacaaaacttcaaagaggcacagtttgttctcaaaaaggtggatcaatcgttccagtcaacatcgaatgacgtcatcaagacaaccaactcgtgcccagccaatgccgacaaaactttgcttgaggcaatgaacatcattgtctcgggaccagcgttcgaaaacaaaaatgttatcaccgttggagcatgcgttcattacctcatcgacccaactggagtcgacgtcgcgtacaaggaataccctgaaggacaactctactcaggagttggtgtttcaaagtcggtgaagacattggaaggaacggacaagaaagttccatcactcttcatgacaactgaaatgaagacaacattgttccatccggattatgccccacttgtggaacttttgcaaacgttcagaggtttcagcacaactctcaaagcgaattctccagccgcgcagagaattgagaaagcctttgttggactggatgttgtcttgaattacggtgtgcacaagggtctcggagaggatggtgtcgttatgaagatccgtcgattccacacgtcagctaaggagacatgttttgaagttgagaagtcaactcgtgaattcacgaacgtctttgactacttcaaaaagaagtatggaatcactttgaagtatcccgatttattcaccattgaagcgaaagggaaacaaggaaaaattcatttccctgcggaagttctccttctctgtccgaaccagacggtcacgaatgatcaaatgatcaacaatgagcaggcggacatgattaagatgtcagccgcacaaccacatatcagaaagacgacaactgatactatcgtgagaaacgtcggattggcttccaacaatatctatggcttcatcaaagttgaagacccagtcaaccttgaaggaatggttcttccaaaacctaagattgcgtttgccggtaaccgactcgctgatttggcaaatccgaagtctagattccccaccgacttcaatcgtgctggacaatattacgatgccaaggaattgacgaaatgggaactggtctttgttcaaaacgaagaagtccaaggacttgctaagcagctcgccgatgaaatggtgaataatggtatgaaatgcagcaacccaacgatgagtttcatcattagaggtgatttggaaccaatcttcaagaaagcgaaggctgctggaacgcaacttctcttcttcgttgtcaaatctcgttacaactatcatcagcaaatcaaggcgttggagcaaaagtatgacgtgctcactcaggagattcgcgctgaaaccgccgagaaagtcttccgtcaaccacaaactcgtcttaacattatcaataagacgaacatgaaactcggaggactgaactatgctattgggagtgaagcgttcaacaagccaaatagattgatcgttggatttgttacttctcaacgagttggtggaaatccagattatccaatatcagttggatttgctgcaaatatgctcaagcatcatcaaaagtttgctggtggatacgtgtatgttcatcgcgatagggatgttttcggatccatcatcaaggatactctcttgacaatcttcaaaacatgcactgagcagcgcggaagaccagatgatatccttttgtatttcaatggagtttccgaaggtcaattctcaatgatcaacgaggaattcagtgcccgagtgaaggaggcgtgcatggcattccaaaaggagggaaccccgccattcagaccacacatcaccatcatcgcctcatcaaaggctcacaacgagcgtctgtacaaatccgacaagggacgtattgttaatttggagccgggtacggtcgtggaccataccattgtgagcaatgtctacactgagtggtatcatgcctcagctgttgctcgccaaggaactgcaaaggctaccaagttcactctcatcttcaccactaaagcaggcccacaagctgagccattgtggcatctcgagcaattgaccaatgatctttgctacgatcatcagattgtcttccatccggtcggacttcccgtcccactgtacattgctgatcgttacagtcaacgtggagcaatggttcttgccgccaatcaaggtccaatctacaatgaaggacaaatcgatctcgcggctaccaacagtgcatatggctacggagagaagaagctcttcaccactcgtttcaatgcataattatctgtactcctccgtttcttttacttggctgtataatgttttatttccgtcaacccagaatactttcgctatgattgtatattttttagcatttggtcattgtaatttgtaattattgtcggaatggataaaatgatttaagaatcaaatgcatcgcttcttggacaattcctgtt
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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