2024-09-28 09:27:02, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001028998 1925 bp mRNA linear INV 11-JUN-2024 DEFINITION Caenorhabditis elegans Homeobox protein unc-62 (unc-62), mRNA. ACCESSION NM_001028998 VERSION NM_001028998.5 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 1925) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK Erratum:[Science 1999 Jan 1;283(5398):35] REFERENCE 2 (bases 1 to 1925) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (11-JUN-2024) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1925) AUTHORS WormBase. CONSRTM WormBase Consortium TITLE Direct Submission JOURNAL Submitted (23-MAY-2024) WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 4 (bases 1 to 1925) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003283). On Feb 2, 2021 this sequence version replaced NM_001028998.4. FEATURES Location/Qualifiers source 1..1925 /organism="Caenorhabditis elegans" /mol_type="mRNA" /strain="Bristol N2" /db_xref="taxon:6239" /chromosome="V" gene 1..1925 /gene="unc-62" /locus_tag="CELE_T28F12.2" /db_xref="GeneID:178845" CDS 5..1699 /gene="unc-62" /locus_tag="CELE_T28F12.2" /standard_name="T28F12.2a" /note="Confirmed by transcript evidence" /codon_start=1 /product="Homeobox protein unc-62" /protein_id="NP_001024169.1" /db_xref="GeneID:178845" /translation="
MSGDSKVWAHASADTWAVQNGISTYDLDTSSIKREKRDHNEQFNDGYGPPPGSASADPASYIADPAAFYNLYTNMGGAPTSTPMMHHEMGEAMKRDKESIYAHPLYPLLVLLFEKCELATSTPRDTSRDGSTSSDVCSSASFKDDLNEFVRHTQENADKQYYVPNPQLDQIMLQSIQMLRFHLLELEKVHELCDNFCNRYVVCLKGKMPLDIVGDERASSSQPPMSPGSMGHLGHSSSPSMAGGATPMHYPPPYEPQSVPLPENAGVMGGHPMEGSSMAYSMAGMAAAAASSSSSSNQAGDHPLANGGTLHSTAGASQTLLPIAVSSPSTCSSGGLRQDSTPLSGETPMGHANGNSMDSISEAGDEFSVCGSNDDGRDSVLSDSANGSQNGKRKVPKVFSKEAITKFRAWLFHNLTHPYPSEEQKKQLAKETGLTILQVNNWFINARRRIVQPMIDQNNRAGRSGQMNVCKNRRRNRSEQSPGPSPDSGSDSGANYSPDPSSLAASTAMPYPAEFYMQRTMPYGGFPSFTNPAMPFMNPMMGFQVAPTVDALSQQWVDLSAPHE"
misc_feature 401..661 /gene="unc-62" /locus_tag="CELE_T28F12.2" /note="N-terminal of Homeobox Meis and PKNOX1; Region: Meis_PKNOX_N; pfam16493" /db_xref="CDD:465140" misc_feature order(1181..1195,1199..1201,1259..1261,1277..1279, 1316..1318,1322..1327,1334..1339,1343..1351) /gene="unc-62" /locus_tag="CELE_T28F12.2" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(1187..1189,1196..1198,1325..1327,1334..1339, 1346..1348) /gene="unc-62" /locus_tag="CELE_T28F12.2" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 1235..1351 /gene="unc-62" /locus_tag="CELE_T28F12.2" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" ORIGIN
gaacatgagcggcgactcaaaagtgtgggctcacgcgtccgctgacacttgggctgttcaaaatggaatttcgacgtacgatttggacacgtcgagcatcaaacgagagaagcgggatcacaatgagcagttcaacgatggatatggtccaccaccgggctcggcgagcgccgacccagccagttatattgccgatccggcggcgttttacaatttgtacacgaatatgggtggcgcgccgacgtcaactccgatgatgcaccatgagatgggtgaagccatgaaacgggataaggagtctatttatgcccatccactctatccacttctagttctcctattcgaaaaatgcgagctcgccacgtcaacgccccgagacacgtcacgcgacggatccacgtcatcggacgtgtgctccagcgcgtctttcaaagatgatctcaacgaatttgtaagacatacccaagagaatgctgacaagcagtactatgtaccgaatccacaactagatcaaattatgctccaatcgattcagatgcttcgattccatctgttggagcttgaaaaggtccacgagctctgcgacaacttctgcaatcgatacgtggtctgtctgaaaggcaaaatgccgctggatatcgttggcgacgagcgtgcctcatcctcacaaccaccaatgtcccccggaagcatgggacacctcggtcactcatcgtccccatcgatggccggtggagcgacgccgatgcactatccaccaccatacgaaccgcaatcagttccattgccggagaatgctggcgtaatgggagggcatccgatggagggatcatcaatggcttattcgatggctggaatggcggccgctgccgcatcatcatcatcgtcttccaaccaagcaggggaccaccctttagcgaacggcgggacgctccactcgacggctggagcctcccagacgctgttgcccatagccgtcagtagtccttcgacgtgctcgtcgggtggtctaagacaggattcgacacccttgtccggtgagacacccatgggtcatgcgaacggaaattcgatggattcgatttcagaagctggcgacgagttctccgtgtgcggatcgaatgatgatggtcgagattcggtgctgtccgactcggcaaacggaagtcagaatggcaagcgaaaagtgccgaaagtattttcaaaggaggcgattaccaaattccgcgcgtggttatttcacaatttgacgcatccctacccatcagaagagcagaagaaacagttggcaaaagaaacgggtctcacaattcttcaggttaacaactggttcatcaacgctcgacgacgaattgtacagccaatgattgatcagaacaaccgagccgggcgtagcggtcagatgaatgtttgtaaaaatcgacgacgaaatcgaagtgagcagtcacctgggccaagtcccgattcgggatcggacagtggagcaaactattcaccggatccatcgtcgctagcggcgagcacagcaatgccgtacccagccgaattctacatgcagaggacgatgccgtacggtggatttccatcattcacaaatccagcaatgccattcatgaatccaatgatgggcttccaagtggctccaacagtagatgctctttctcaacaatgggttgatctctcagcaccacacgaataagggtccgaacatatttattacaacagtataccgccaaaggttctcctcaaatgatcagttgtttttttttggaatcgtttttccaagttttccatgactttaaatgtttctctctctctctctgcgtctctcactccctcacactctctctctctctctataactactacagattcgccaatttccatggtaaaaatggtaatatcgactatttgttattgttctc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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