2024-09-29 09:39:35, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_201959 2311 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana O-fucosyltransferase family protein (AT2G44500), mRNA. ACCESSION NM_201959 VERSION NM_201959.1 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 2311) AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D., Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V., Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L., Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L., Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H., Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D., Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and Venter,J.C. TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana JOURNAL Nature 402 (6763), 761-768 (1999) PUBMED 10617197 REFERENCE 2 (bases 1 to 2311) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2311) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 2311) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003071). FEATURES Location/Qualifiers source 1..2311 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="2" /ecotype="Columbia" gene 1..2311 /locus_tag="AT2G44500" /gene_synonym="F4I1.31" /db_xref="Araport:AT2G44500" /db_xref="GeneID:819057" /db_xref="TAIR:AT2G44500" CDS 156..1424 /locus_tag="AT2G44500" /gene_synonym="F4I1.31" /inference="Similar to RNA sequence, EST:INSD:BP597770.1,INSD:BP798053.1,INSD:EL128245.1, INSD:AV820246.1,INSD:CB255170.1,INSD:DR354621.1, INSD:BP824002.1,INSD:EH847016.1,INSD:EH919299.1, INSD:EL260072.1,INSD:BP799479.1,INSD:BE520571.1, INSD:BP800697.1,INSD:BP608940.1,INSD:AV537740.1, INSD:DR363389.1,INSD:AV547353.1,INSD:BE520246.1, INSD:ES056039.1,INSD:BP601182.1,INSD:CD531677.1, INSD:BP592594.1,INSD:EL184113.1,INSD:DR383531.1, INSD:BE521417.1,INSD:BE520245.1,INSD:CD534306.1, INSD:BE521418.1,INSD:AV534254.1,INSD:BP816644.1, INSD:BP567288.1,INSD:BP636884.1,INSD:N96361.1, INSD:BP651721.1,INSD:EL189954.1,INSD:BP856757.1, INSD:ES174535.1,INSD:BP619334.1,INSD:AV557930.1, INSD:ES207054.1,INSD:BX836997.1,INSD:BX837994.1, INSD:EL215602.1,INSD:AV819611.1,INSD:BP606438.1, INSD:AV549759.1,INSD:EH833376.1,INSD:EL095447.1, INSD:ES190524.1" /inference="similar to RNA sequence, mRNA:INSD:AK220874.1,INSD:BX819345.1" /note="O-fucosyltransferase family protein; CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT3G07900.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink)." /codon_start=1 /product="O-fucosyltransferase family protein" /protein_id="NP_973688.1" /db_xref="Araport:AT2G44500" /db_xref="GeneID:819057" /db_xref="TAIR:AT2G44500" /translation="
MALSKNSNSNSFNKKKVSYISVPSQIINSLSSSSLQSLLVSPKKSSRSTNRFSFSYRNPRIWFFTLFLVSLFGMLKLGFNVDPISLPFSRYPCSTTQQPLSFDGEQNAASHLGLAQEPILSTGSSNSNAIIQLNGGKNETLLTEGDFWKQPDGLGFKPCLGFTSQYRKDSNSILKNRWKYLLVVVSGGMNQQRNQIVDAVVIARILGASLVVPVLQVNVIWGDESEFADIFDLEHFKDVLADDVHIVSSLPSTHVMTRPVEEKRTPLHASPQWIRAHYLKRINRERVLLLRGLDSRLSKDLPSDLQKLRCKVAFQALRFSPRILELGNKLASRMRNQGQYLSLHLRMEKDVWVRTGCLPGLTPEYDEIVNSERERHPELLTGRSNMTYHERKLAGLCPLTALEVTRYYTNSMNKSFCLCFFK"
misc_feature 693..>1367 /locus_tag="AT2G44500" /gene_synonym="F4I1.31" /note="GDP-fucose protein O-fucosyltransferase and related proteins; Region: O-FucT_like; cl16914" /db_xref="CDD:450121" ORIGIN
ctccctctctctctctttttctctctcacacgtttcttttttgtctctctccctgattcatcgccgtagctgtgtgaccgaacattgctgcgagttcctcaaaacccaaatctttcttcctcaaagactctgttttttctttcttcctttcttcaatggcgttatcgaaaaacagtaacagtaacagctttaacaagaagaaagtttcgtatatctcagtcccttctcagatcataaactctttatcatcttcctcattacaatctcttcttgtttctcccaagaaatcatcaagaagcaccaacagattcagcttctcttataggaaccctagaatctggttctttactctcttcctcgtctcactctttggaatgttgaaactcggtttcaacgttgacccaatctctctccctttctcacgttacccttgttcaacgacccaacaaccactaagcttcgacggagaacaaaacgctgcatcccatcttggtttggctcaagagccgattttgtctactgggtcatcgaattcgaatgcgattatacaattaaacggtggaaagaacgagactttgttaacggaaggtgatttctggaagcaacctgatgggttagggtttaagccctgtttgggatttacaagtcaatatagaaaagatagcaattcgattttgaagaacagatggaagtatttgcttgttgttgtctctggtgggatgaatcagcaaaggaatcagattgttgatgctgttgtgatcgctaggatccttggagcttctttagttgttcctgttttgcaggttaatgtcatttggggagacgaaagtgaatttgcggatatattcgatttggagcatttcaaggatgttttagcagatgatgttcatatagtttcgtctttaccttctacacatgttatgacgagacctgttgaagagaagaggactccacttcatgcttctcctcaatggattcgtgctcattatcttaagcgaattaacagagaaagagttttacttctccgtggactcgattcaagactctccaaagacctcccttcagatcttcagaaactccgatgcaaggttgctttccaagcgcttagattttctccgaggattcttgaactcggtaataaactagcttcaagaatgcgtaaccaaggacagtatctctcacttcatctaagaatggagaaagatgtttgggttagaactggttgtctccctggtttaactcccgagtacgatgaaatagtcaacagcgaaagagaacgacaccctgagcttcttaccggtagatcaaacatgacttatcacgagagaaaacttgccggtttatgccctttaactgctctagaagtcacaaggtattataccaactctatgaacaaatccttttgcttatgttttttcaagtaatactaacattttgttgtcattctacaggctgcttaaagcattagaagctccaaaggatgcgagaatctattgggcaggaggagagcctctaggaggaaaagaggttttggagccactaactaaagaattccctcagttctacaacaagcacgatcttgctttacctggcgagcttgaaccatttgccaacaaagcttcggttatggctgctatagactacattgtctgcgaaaagagcgatgttttcataccgtctcatggaggaaatatgggacacgcgttacaagggcaaagagcttacgctggtcacaagaaatacatcactcctaataagagacagatgcttccttatttcatgaactcgtcgcttcctgaatcggattttaacagaattgtgaaagatcttcatcgagaatcgctaggacagccggagttgagaatgagcaaagctggtaaagatgttacaaaacatcctgttccagagtgtatgtgctcggatagacaacaacaagaacaacagtccgatgcttaagccttgaaggacattttggacattatttggtgcgcggaaaatgaagaagacgccgattttttcccgatcacccggaagattgattgaggaagacgattcatggtggttcgtgcgatattcttttagttcgggttttaatctgatcattttttcaaaatcttttggagtaaatatatattcgtttcaactgaggttatttttttcttacatgtttttacgatatacgtgagaagtagaatagtgaggttataagatatgattctttgattcgatttatttgggctgtaattatatattacagagtttgtatacggttctagttgtacttgtactataaataaagcaacagttaatc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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