2024-09-28 09:24:21, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_179558 1828 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana Erythronate-4-phosphate dehydrogenase family protein (AT1G75180), mRNA. ACCESSION NM_179558 VERSION NM_179558.3 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 1828) AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S., White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L., Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F., Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R., Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J., Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B., Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J., Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L., Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S., Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X., Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J., Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G., Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H., Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H., Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T., Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G., Fraser,C.M., Venter,J.C. and Davis,R.W. TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 816-820 (2000) PUBMED 11130712 REFERENCE 2 (bases 1 to 1828) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1828) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 1828) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 5 (bases 1 to 1828) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003070). On Apr 18, 2007 this sequence version replaced NM_179558.2. FEATURES Location/Qualifiers source 1..1828 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="1" /ecotype="Columbia" gene 1..1828 /locus_tag="AT1G75180" /gene_synonym="F22H5.9; F22H5_9" /db_xref="Araport:AT1G75180" /db_xref="GeneID:843855" /db_xref="TAIR:AT1G75180" CDS 526..1257 /locus_tag="AT1G75180" /gene_synonym="F22H5.9; F22H5_9" /inference="Similar to RNA sequence, EST:INSD:EG520495.1,INSD:DR208249.1,INSD:BP839793.1, INSD:EL049547.1,INSD:ES014798.1,INSD:DR208247.1, INSD:EL129094.1,INSD:EL331147.1,INSD:EL056548.1, INSD:BP607641.1,INSD:EH986851.1,INSD:EH833854.1, INSD:EL259413.1,INSD:BP846105.1,INSD:EH868738.1, INSD:EG520498.1,INSD:BP807722.2,INSD:DR208246.1, INSD:EL297050.1,INSD:EL171594.1,INSD:EG520500.1, INSD:EL199804.1,INSD:DR376163.1,INSD:BP650505.1, INSD:AV801783.1,INSD:EL105121.1,INSD:W43183.1, INSD:EL025056.1,INSD:DR363569.1,INSD:ES052024.1, INSD:BP833736.1,INSD:BP596761.1,INSD:DR274116.1, INSD:DR363568.1,INSD:EG520493.1,INSD:AV810112.1, INSD:ES195472.1,INSD:DR363567.1,INSD:EH806679.1, INSD:EH821746.1,INSD:EG520494.1,INSD:CD534337.1, INSD:ES054194.1,INSD:EL279340.1,INSD:ES080305.1, INSD:DR208241.1,INSD:AU229147.1,INSD:BP617000.1, INSD:AV786122.1,INSD:BP857506.1,INSD:DR382947.1, INSD:BP594154.1,INSD:DR363566.1,INSD:EL142697.1, INSD:EL069586.1,INSD:EL089269.1,INSD:BP639044.1, INSD:BP829783.1,INSD:EL303526.1,INSD:BP613995.1, INSD:EG520501.1,INSD:EH935963.1,INSD:EL238046.1, INSD:EL047666.1,INSD:BP567476.1,INSD:BP595973.1, INSD:EH985991.1,INSD:ES000520.1,INSD:DR255347.1, INSD:DR208242.1,INSD:EL056669.1,INSD:BP636835.1, INSD:DR208244.1,INSD:AV558656.1,INSD:EG520492.1, INSD:EL053165.1,INSD:DR363570.1,INSD:AV809301.1, INSD:ES004463.1,INSD:DR208250.1,INSD:DR274114.1, INSD:DR255346.1,INSD:DR274115.1,INSD:DR208243.1, INSD:ES000002.1,INSD:EH899701.1,INSD:CD534338.1, INSD:EG520499.1,INSD:EH940339.1,INSD:BP667699.1, INSD:DR208245.1,INSD:EH894384.1,INSD:EL269204.1, INSD:EL013403.1,INSD:ES064574.1,INSD:EL052124.1, INSD:EG520491.1,INSD:DR274113.1,INSD:EG520496.1, INSD:EH863641.1,INSD:ES071141.1,INSD:ES065378.1, INSD:EH862715.1" /inference="similar to RNA sequence, mRNA:INSD:BT001101.1,INSD:AK221269.1" /note="Erythronate-4-phosphate dehydrogenase family protein; BEST Arabidopsis thaliana protein match is: Erythronate-4-phosphate dehydrogenase family protein (TAIR:AT1G19400.2); Has 125 Blast hits to 125 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink)." /codon_start=1 /product="Erythronate-4-phosphate dehydrogenase family protein" /protein_id="NP_849889.3" /db_xref="Araport:AT1G75180" /db_xref="GeneID:843855" /db_xref="TAIR:AT1G75180" /translation="
MVEPYETRNNGEASQMIRYQSYNHHNSRLPSSLSSPLLDLRVFYVRISNFKVDHSTPEVLTITHIPLDPDSLLEINGVRMSMYSEGVSSQLRRDRVDKKSEVATFISTDNIRLSGSVKFEVYDKDELVLSGTLEMSGSNGFTGESKHSVKRWNMNCEAEITAESGFLKEKHIGGSELSSPLPTIEVYVTGCFSGTPIILTKTLQLGFRKKHGRVTALDSIPEYETDEPHKGNSSELDYQSVLR"
ORIGIN
agaaagtcagaagagcccatcttcttcttcctcttggttcttgcctctctcttctcgttggatatcataaaaagacaattctatcgagttcccatcactattcccgatttctgatttatttttccctttcactgtagatccttttttccgactcacacactttcgatattttcttttgttttcttcaaaaaagacatattttttttgctgggactatcaattggggtccgtcgccacgccacgcgccgagctcgcaatatatcgaaagcaacgatctaggaaggatcttaaaaatcctacttggccacaaatttttgctatttttattattttccgtgtttaatttctgattcagacaggaagattaatattaagcactagttgtgcaaattcacaatttttttttgtggatggaaacaaatttctggcacacgtattccaatccaaatcgacaatatacgcgtctctgatggatatgttttggattcagtgagaaacagagattgattttggttttctttaatcatggtggagccttatgagacacgtaacaacggtgaagcatcccagatgatcagatatcagagttataaccatcacaattccagactaccatcttcattatcatcgccattgcttgatttgagagtgttctatgtcagaatcagtaatttcaaggtggatcattcgacacctgaggttctcaccattactcatattcctttggatccagattcacttctggagattaatggtgttagaatgagcatgtactctgaaggagtttcttctcagcttaggcgtgatcgtgttgataagaaatctgaagttgctacttttatcagcacggataatatcaggttatctggtagtgtgaagtttgaggtttatgataaagatgagctggttttgtctggaacgcttgagatgtctggtagtaatggtttcactggtgaatctaagcatagcgtgaagcggtggaacatgaattgtgaagctgagatcactgcagagtctggtttcttgaaggagaaacatattggtggttcggagttatcttctccattgccaactattgaagtctatgtcactggctgcttttctggaactcctatcatcctaacgaagactctacagcttggtttcagaaagaagcacggtagagtgactgcattagattcgattcccgagtatgaaactgatgagcctcataaaggaaactcatctgagcttgattatcagtcagttctaaggtgacttattggttggaatatcgtggttttcacatgttactgaatatggaagttataaacaagaatatgaaggagaacacagcgacatgtactggaatagagagtacgcagatggtgaagatggtgagatgtcgtggttcaacgctggtgtgagggttggtgtgggaattggtcttggtgtctgtgtaggtcttggcattggggttggccttctggtgcgtacctatcaatcgaccaccagaaacttcagaaggaggattatctagtttcattcaaattgcctcaagcttcatctactctctccctctaactccaatccgttgcacatcacttttgactgcagaactctaagctatatagtctaagctaatactgctgtgtagtataatttttgttttatgtactttttaatctctttgtgccttcaaattttgaaagaaatcattttcccttcttcttgtgtttggtgagattcagattgaaagaaacaaagcttgttgctggtaatgcgaatcttgttttctgcttcctgtaaataaaatgcttatgagtgtaaagagtttttggattcgctt
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@meso_cacase at
DBCLS
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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