2024-09-28 11:16:18, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_179453 3615 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana Stabilizer of iron transporter SufD / Polynucleotidyl transferase (AGO1), mRNA. ACCESSION NM_179453 VERSION NM_179453.3 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 3615) AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S., White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L., Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F., Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R., Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J., Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B., Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J., Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L., Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S., Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X., Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J., Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G., Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H., Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H., Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T., Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G., Fraser,C.M., Venter,J.C. and Davis,R.W. TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 816-820 (2000) PUBMED 11130712 REFERENCE 2 (bases 1 to 3615) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3615) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 3615) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 5 (bases 1 to 3615) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003070). On Sep 12, 2016 this sequence version replaced NM_179453.2. FEATURES Location/Qualifiers source 1..3615 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="1" /ecotype="Columbia" gene 1..3615 /gene="AGO1" /locus_tag="AT1G48410" /gene_synonym="ARGONAUTE 1; AtAGO1; ICU9; T1N15.2; T1N15_2" /note="Encodes an RNA Slicer that selectively recruits microRNAs and siRNAs. There is currently no evidence that AGO1 Slicer is in a high molecular weight RNA-induced silencing complex (RISC). Mutants are defective in post-transcriptional gene silencing and have pleiotropic developmental and morphological defects. Through its action on the regulation of ARF17 expression, the protein regulates genes involved at the cross talk between auxin and light signaling during adventitious root development. AGO1 seems to be targeted for degradation by silencing suppressor F-box-containing proteins from Turnip yellow virus and Cucurbit aphid-borne yellow virus." /db_xref="Araport:AT1G48410" /db_xref="GeneID:841262" /db_xref="TAIR:AT1G48410" CDS 214..3366 /gene="AGO1" /locus_tag="AT1G48410" /gene_synonym="ARGONAUTE 1; AtAGO1; ICU9; T1N15.2; T1N15_2" /inference="Similar to RNA sequence, EST:INSD:EL278924.1,INSD:ES018921.1,INSD:EG482202.1, INSD:EL984280.1,INSD:BE523184.1,INSD:ES014337.1, INSD:ES007162.1,INSD:EL097016.1,INSD:AV534003.1, INSD:AV529834.1,INSD:AV792863.1,INSD:BP802141.1, INSD:EH902668.1,INSD:ES164270.1,INSD:EG444790.1, INSD:BP805355.1,INSD:EL983185.1,INSD:CK121100.1, INSD:BP619936.1,INSD:BP782965.1,INSD:BP599876.1, INSD:ES000015.1,INSD:BP650907.1,INSD:AV560716.1, INSD:BE521779.1,INSD:EL140108.1,INSD:AV825907.1, INSD:ES145208.1,INSD:EL978323.1,INSD:DR360441.1, INSD:BP778517.1,INSD:EL992465.1,INSD:ES012574.1, INSD:AV442417.1,INSD:BE522317.1,INSD:AV547483.1, INSD:BP795190.1,INSD:AV545970.1,INSD:DR358384.1, INSD:AV547579.1,INSD:EL974997.1,INSD:ES187778.1, INSD:BP618364.1,INSD:BP821084.1,INSD:AV546614.1, INSD:BP637165.1,INSD:BP780450.1,INSD:ES027183.1, INSD:BE526469.1,INSD:ES098990.1,INSD:ES121377.1, INSD:AV548172.1,INSD:BP809751.1,INSD:AV789090.1, INSD:DR231030.1,INSD:ES203260.1,INSD:BP561348.2, INSD:BP818491.1,INSD:AV532952.1,INSD:AV547340.1, INSD:DR231028.1,INSD:BE520592.1,INSD:ES068711.1, INSD:AV813765.1,INSD:BE520591.1,INSD:BP611041.1, INSD:EL979901.1,INSD:ES135762.1,INSD:EL990266.1, INSD:BP853328.1,INSD:BP863976.1,INSD:EG482203.1, INSD:BP657306.1,INSD:DR275828.1,INSD:EL968153.1, INSD:AV548086.1,INSD:DR378754.1,INSD:EG444787.1, INSD:EL079537.1,INSD:ES159373.1,INSD:AU235788.1, INSD:BP620405.1,INSD:DR228191.1,INSD:DR231029.1, INSD:BP805710.1,INSD:AV554842.1,INSD:BP823102.1, INSD:BP837553.1,INSD:DR275827.1,INSD:AV546856.1, INSD:ES216018.1,INSD:BP654109.1,INSD:BE524288.1, INSD:ES105762.1,INSD:AV441187.1,INSD:EL986984.1, INSD:AV547477.1,INSD:BP804459.1,INSD:ES037987.1, INSD:AV563657.1,INSD:BP640077.1,INSD:AV529559.1, INSD:AV522776.1,INSD:AU226551.1,INSD:BP782038.1, INSD:AV528296.1,INSD:EL259775.1,INSD:EL993546.1, INSD:ES155368.1,INSD:EL986594.1,INSD:AI993691.1, INSD:AV523806.1,INSD:ES098152.1,INSD:BP803249.1, INSD:BP806924.1,INSD:ES216225.1,INSD:ES019192.1, INSD:EG527340.1,INSD:AA651494.1,INSD:BE528432.1, INSD:N65911.1,INSD:BP617474.1,INSD:EL981380.1, INSD:BP601377.1,INSD:ES002718.1,INSD:BP658160.1, INSD:BE522318.1,INSD:AV523959.1,INSD:ES034147.1, INSD:BE520537.1,INSD:ES009225.1,INSD:AA720232.1, INSD:BP836412.1,INSD:EG527339.1,INSD:EL977092.1, INSD:BE529510.1,INSD:BP575189.1,INSD:DR236108.1, INSD:EL971994.1" /inference="similar to RNA sequence, mRNA:INSD:AK227868.1,INSD:BX815116.1,INSD:AY080690.1" /note="ARGONAUTE 1 (AGO1); FUNCTIONS IN: protein binding, endoribonuclease activity, siRNA binding, miRNA binding; INVOLVED IN: in 11 processes; LOCATED IN: cytosol, nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1785 (InterPro:IPR014811), Stem cell self-renewal protein Piwi (InterPro:IPR003165), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Stabilizer of iron transporter SufD / Polynucleotidyl transferase (TAIR:AT5G43810.2); Has 29273 Blast hits to 15910 proteins in 1188 species: Archae - 22; Bacteria - 5814; Metazoa - 12632; Fungi - 2415; Plants - 4633; Viruses - 405; Other Eukaryotes - 3352 (source: NCBI BLink)." /codon_start=1 /product="Stabilizer of iron transporter SufD / Polynucleotidyl transferase" /protein_id="NP_849784.1" /db_xref="Araport:AT1G48410" /db_xref="GeneID:841262" /db_xref="TAIR:AT1G48410" /translation="
MVRKRRTDAPSEGGEGSGSREAGPVSGGGRGSQRGGFQQGGGQHQGGRGYTPQPQQGGRGGRGYGQPPQQQQQYGGPQEYQGRGRGGPPHQGGRGGYGGGRGGGPSSGPPQRQSVPELHQATSPTYQAVSSQPTLSEVSPTQVPEPTVLAQQFEQLSVEQGAPSQAIQPIPSSSKAFKFPMRPGKGQSGKRCIVKANHFFAELPDKDLHHYDVTITPEVTSRGVNRAVMKQLVDNYRDSHLGSRLPAYDGRKSLYTAGPLPFNSKEFRINLLDEEVGAGGQRREREFKVVIKLVARADLHHLGMFLEGKQSDAPQEALQVLDIVLRELPTSRIRYIPVGRSFYSPDIGKKQSLGDGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEANPVIQFVCDLLNRDISSRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTAVATRELTFPVDERNTQKSVVEYFHETYGFRIQHTQLPCLQVGNSNRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPIDREKDILQTVQLNDYAKDNYAQEFGIKISTSLASVEARILPPPWLKYHESGREGTCLPQVGQWNMMNKKMINGGTVNNWICINFSRQVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVSARPEQVEKVLKTRYHDATSKLSQGKEIDLLIVILPDNNGSLYGDLKRICETELGIVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEITKYAGLVCAQAHRQELIQDLFKEWKDPQKGVVTGGMIKELLIAFRRSTGHKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEAGYQPPVTFVVVQKRHHTRLFAQNHNDRHSVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMASGSMARGGGMAGRSTRGPNVNAAVRPLPALKENVKRVMFYC"
misc_feature 448..729 /gene="AGO1" /locus_tag="AT1G48410" /gene_synonym="ARGONAUTE 1; AtAGO1; ICU9; T1N15.2; T1N15_2" /note="Glycine-rich region of argonaut; Region: Gly-rich_Ago1; pfam12764" /db_xref="CDD:463691" misc_feature 700..3363 /gene="AGO1" /locus_tag="AT1G48410" /gene_synonym="ARGONAUTE 1; AtAGO1; ICU9; T1N15.2; T1N15_2" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" ORIGIN
ccgtaacttactctaaccacagaacccttgaatttaaagtgtagcagtaaaatctcatttctttgagttatctcgtttgttcggagttagagagagagagaaagatatagagagaacacagagaggcgagagcgacgtagggttggtgtttcgtacggattttctcggtcaatcttagtttctccggcgagagattgcttttcaggaatcatcatggtgagaaagagaagaacggatgctccatctgaaggaggtgaaggctctgggtctcgtgaagctggtccagtctcaggtggtggacgtggttcacagcgaggtggtttccagcagggaggaggacaacaccaaggtggaaggggttatactcctcaacctcaacagggaggtcgtggtggtcgtggatatgggcaaccaccacaacagcaacaacagtatggaggaccacaagagtaccaaggaagaggaagaggaggacctcctcatcaaggaggtcgaggagggtatggcggtggccgtggaggtggaccttcttctggaccaccgcagagacaatcagttcccgagctgcatcaagctacctcacctacttatcaagcggtgtcttctcagcctacactgtctgaggtgagtcctacccaggtaccagaacctactgttctggctcagcaatttgaacaactctctgttgaacaaggagctcccagtcaggcaatccagcctataccttcttctagcaaggctttcaagtttccaatgaggcctggtaaaggacagagtggaaagcgttgcattgtgaaggctaaccatttctttgctgaactgcctgataaggatttgcaccattatgatgttaccattactccggaagttacatcaaggggtgtcaatcgtgctgtgatgaaacaacttgttgataattatcgtgattctcaccttggaagtcgtcttccagcgtatgatggtcgaaaaagtctttacactgctggtccacttccctttaactccaaggagttcagaatcaatcttcttgacgaagaagtaggggctggaggtcaaagacgagaaagggaatttaaagttgtgatcaagctagttgcacgtgctgatctgcatcacctaggaatgtttttggaggggaaacaatcagatgccccacaggaagctctgcaggttcttgacattgttcttcgtgagctgccgacctctagaatcaggtatattccggtgggccggtccttttattcccctgatataggaaaaaaacaatcattgggggatggcttggagagctggcgtggattctaccaaagcattcgtcctacacagatgggcttatcactcaatattgatatgtcatcgacagccttcatagaggcaaaccctgtgattcagtttgtctgtgatttgcttaaccgggatatttcttctcgacctttatctgatgctgatcgtgttaagataaaaaaggctcttagaggtgtcaaagttgaagtgactcatcgaggaaacatgcgccggaagtaccgcatttccggtttgactgctgtggccactcgggaattgacattcccagtagatgaaagaaatactcagaaatctgttgtagaatacttccacgaaacatatggttttcgcattcagcacactcaactaccatgcttgcaagttgggaattctaataggcctaattacttaccaatggaggtatgcaagattgttgaaggccagcggtattccaaaagattgaatgagagacagatcactgctttgctgaaggttacctgtcagcgcccgatagatcgagaaaaagatatcttacagacggtgcaactcaatgattatgctaaagataattatgctcaagagtttggcatcaaaataagtacttctctggcttctgttgaggctcgtatactgcctcctccatggcttaagtaccacgagtctggaagggaagggacttgtctgccacaagttggtcaatggaacatgatgaataagaaaatgatcaatggtggaacggtgaataattggatctgcatcaacttttctaggcaagtgcaggacaatctagcgcgtacattttgtcaggaacttgctcaaatgtgttacgtatctggcatggcatttaatccggaaccagtcctcccaccagtcagtgctcgccctgagcaagtagagaaggtcttgaagactagatatcatgatgccacatcaaaactctcccaaggaaaagaaattgatctgcttattgtcattctgcccgataataatggatcattatacggtgatttgaaacgcatatgtgagactgaactcggcatagtctctcaatgttgcctgacaaagcatgtctttaagatgagcaaacaatacatggctaatgttgcgctgaagattaatgtgaaggttggaggaagaaacacagtgcttgttgatgctctatctaggcggattcctctagtcagtgatcgacccaccattatatttggtgctgatgttacccaccctcaccctggagaggattcaagcccatctattgctgctgttgtggcatctcaggattggcctgaaatcactaaatatgctggattagtttgcgctcaagcgcataggcaggagctcattcaggatctgttcaaagagtggaaggatcctcagaaaggtgtggtgactggtggcatgataaaggagttgctcatagccttccgtagatcaactgggcataaaccactaaggatcatcttctacagggatggagtcagtgagggacaattttaccaagttttgctctatgaacttgatgccatccgcaaggcctgtgcttcgctggaagcaggttatcaaccaccagtgacatttgtggtggtgcagaagcgtcatcacacgaggctgtttgctcagaaccacaatgatcgccattcggtggacagaagtgggaatattttacctggcactgttgtggactctaaaatctgccaccctacagagtttgacttttacctctgtagtcatgctggtattcagggcacttctcgacctgctcattaccacgttctttgggatgagaacaactttactgcagatggacttcaatctctgaccaataacttatgttacacgtatgcaagatgcacacgctcagtttcaattgttccccctgcatattatgcacatctagcagcttttagggctcgattctacatggagccagagacatcagacagtggctcaatggctagtgggagcatggcacgtggaggtggaatggctggtagaagcacacgcgggcctaatgtcaatgctgcagtgaggccactcccagctctgaaagagaatgtgaagcgtgtcatgttctactgctgagttgattcaccctctatctatctttatgacctaaattaatgaagaatatcatgtatgctttctaagacttatcgtgtgtttggatatttcatcactctttctctatgagtatgagatgctttatgactcttgtttgacaactactaaaatttattattcaaaacagactttgatcctttctttaactcgtcttaaatctttattcaagagattttgtgtttagagatgtttaggttgtttgtattgtcg
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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