2024-09-28 09:28:37, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_148870 1237 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana ovate family protein 6 (OFP6), mRNA. ACCESSION NM_148870 VERSION NM_148870.3 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 1237) AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M., Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B., Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P., Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V., Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S., Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P., Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S., Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H., Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M., Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A., Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C., Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P., Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M., Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S., Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L., Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A., Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B., Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J., Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X., Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M., Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S., Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C., Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S., Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A., Yamada,M., Yasuda,M. and Tabata,S. CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium; Institute for Genomic Research; Kazusa DNA Research Institute TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 820-822 (2000) PUBMED 11130713 REFERENCE 2 (bases 1 to 1237) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1237) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 1237) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003074). On Sep 12, 2016 this sequence version replaced NM_148870.2. FEATURES Location/Qualifiers source 1..1237 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="3" /ecotype="Columbia" gene 1..1237 /gene="OFP6" /locus_tag="AT3G52525" /gene_synonym="ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6; ATOFP6; ovate family protein 6" /db_xref="Araport:AT3G52525" /db_xref="GeneID:824418" /db_xref="TAIR:AT3G52525" CDS 215..694 /gene="OFP6" /locus_tag="AT3G52525" /gene_synonym="ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6; ATOFP6; ovate family protein 6" /inference="Similar to RNA sequence, EST:INSD:EL112609.1,INSD:BP785372.1,INSD:AU226529.1" /note="ovate family protein 6 (OFP6); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF623 (InterPro:IPR006458); BEST Arabidopsis thaliana protein match is: Ovate family protein (TAIR:AT2G36026.1); Has 453 Blast hits to 451 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 453; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink)." /codon_start=1 /product="ovate family protein 6" /protein_id="NP_680125.1" /db_xref="GeneID:824418" /db_xref="TAIR:AT3G52525" /db_xref="Araport:AT3G52525" /translation="
MATKSKKKILKTVSVVDISCGNCIKPTFASIFNFFSKKPKRPSSTYRHCHSSISSATPSSTPLATASVAVEKDSDDPYLDFRQSMLQMILENQIYSKDELRELLQCFLSLNSHYHHGIIVRAFSEIWEDVSSAAASAVEASPLITRHVSRASRDYYNYY"
misc_feature 434..601 /gene="OFP6" /locus_tag="AT3G52525" /gene_synonym="ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6; ATOFP6; ovate family protein 6" /note="Transcriptional repressor, ovate; Region: Ovate; pfam04844" /db_xref="CDD:461454" ORIGIN
ctttgatcacccaaaaatccaaaataaaaaatctagactttctaatacacattcattgtgaaatttataaatttatgacccacatgcatacatttatacatattcatgcaaactttctatatctctgtatatatatatatatcaaccctccctccataatctctatacctcttctctctcctccttagtctttagcagatacagagtcagaacaatggcgactaaaagcaagaagaagatcctgaagactgtatctgttgtcgacatcagctgcggcaactgtataaaaccaactttcgcctctattttcaactttttctccaaaaagcctaaacgtccctcgtctacttaccgtcactgccactcctccatctcctccgccacaccctcctccacgcctttggccaccgcatccgtcgccgtggagaaagattctgacgatccgtacctagatttccggcagtctatgcttcaaatgatactagagaaccagatttactcgaaagatgaacttagagagcttcttcaatgtttcctcagcctcaattctcactatcatcacggcatcatcgtccgtgccttctcggaaatatgggaagacgtttcctccgccgctgcttccgccgtcgaagcgtcccctctcatcacccgtcatgtgtcacgtgcgtcacgtgattactataactattactagctaggctatataatcaatgaaaataaaaatagctatctatctcgtatttatgtttttgttagggaagtaacgttaccgtgatcctaataacactttttaattaggaatatgccacgtcatcagtataatgacacgtggaataaaagtgataatgctcttactttatttatccttagctttggttcttttatctttagctttggtatcttcattattcgtcttgataccgtagcaatgatggtaagatagatgctaatgtattataactctgtgtatgtggattgtggtttgtggacctatattaatcttcaggtattgtaattaagtaacatctttatttgtttttgttgcgtagttataatcagccaaaaaacgaattgggatagatgacatatttcaaaggttttcgtcactcgtgactctctctggtagtgacgtgaatgttcccaactacacgttaaattttatttattttaagttacagtacgatgtctgtaaattttctgatctttaattaaaatatataatcttttgtacaacaaa
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@meso_cacase at
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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