2024-09-28 09:27:56, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_129697 1532 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana RNA polymerase II fifth largest subunit, D (RPB5D), mRNA. ACCESSION NM_129697 VERSION NM_129697.3 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 1532) AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D., Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V., Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L., Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L., Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H., Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D., Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and Venter,J.C. TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana JOURNAL Nature 402 (6763), 761-768 (1999) PUBMED 10617197 REFERENCE 2 (bases 1 to 1532) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1532) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 1532) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003071). On Sep 12, 2016 this sequence version replaced NM_129697.2. FEATURES Location/Qualifiers source 1..1532 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="2" /ecotype="Columbia" gene 1..1532 /gene="RPB5D" /locus_tag="AT2G41340" /gene_synonym="''RNA polymerase II fifth largest subunit; D; D''; F13H10.11; F13H10_11; RNA polymerase II fifth largest subunit" /note="NRPE5-like protein of unknown function; homologous to budding yeast RPB5" /db_xref="Araport:AT2G41340" /db_xref="GeneID:818732" /db_xref="TAIR:AT2G41340" CDS 267..923 /gene="RPB5D" /locus_tag="AT2G41340" /gene_synonym="''RNA polymerase II fifth largest subunit; D; D''; F13H10.11; F13H10_11; RNA polymerase II fifth largest subunit" /inference="similar to RNA sequence, mRNA:INSD:AY078926.1" /note="''RNA polymerase II fifth largest subunit, D'' (RPB5D); FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, Rpb5, N-terminal (InterPro:IPR005571), RNA polymerase, subunit H/Rpb5 C-terminal (InterPro:IPR000783), DNA-directed RNA polymerase, RPB5 subunit (InterPro:IPR014381); BEST Arabidopsis thaliana protein match is: Eukaryotic rpb5 RNA polymerase subunit family protein (TAIR:AT3G57080.1); Has 971 Blast hits to 971 proteins in 339 species: Archae - 231; Bacteria - 0; Metazoa - 155; Fungi - 216; Plants - 119; Viruses - 8; Other Eukaryotes - 242 (source: NCBI BLink)." /codon_start=1 /product="RNA polymerase II fifth largest subunit, D" /protein_id="NP_181665.1" /db_xref="Araport:AT2G41340" /db_xref="GeneID:818732" /db_xref="TAIR:AT2G41340" /translation="
MEGKGKEIVVGHSISKSSVECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPDVDLLRISAKHRFDSSKKISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKAVELFSFKVELFEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQLPRLSSKDPIVRYYGLETGQVMKVTYKDELSESHVTYRCVS"
misc_feature 306..917 /gene="RPB5D" /locus_tag="AT2G41340" /gene_synonym="''RNA polymerase II fifth largest subunit; D; D''; F13H10.11; F13H10_11; RNA polymerase II fifth largest subunit" /note="DNA-directed RNA polymerase II subunit family protein; Provisional; Region: PLN03111" /db_xref="CDD:215582" ORIGIN
cttatctcttctagctattttagtatggcttaccatttttccaaaaaccagtgtcactaaagttacagaacaatcgcctttgactacatcacctgcttgatcattggctaccatccaagtctgtttgtaaacttcatccgctgtcacggtaaaaacgtcacgggtaaactgattattgaaaacgacaacgggtcttatcatcttcaaacccctcacattactcaagctttgcttccttccccgagaccgagagagagagagagacgatggaggggaaagggaaagagatagtggttggacattccattagtaaatcaagtgtagagtgtcacaaatattacctggcacgtcgaaccaccatggagatgctccgagacagaggatacgatgtctccgacgaagatattaacctctccctccagcaatttcgagcgctctatggggaacatcctgacgtagatctacttcgtatctcagccaaacatcgctttgattcttcgaaaaagatctcggtagtgttttgtggaactggtatagttaaagtcaatgcgatgcgcgtcattgcagcagatgtgcttagccgagaaaatataaccggactgatactggttttgcaaagtcatataacgaaccaagctcttaaagccgttgaacttttctcctttaaggtcgagttattcgagattaccgatttgttggttaacgtaagcaaacatgtcttgaggccaaaacatcaggttctgaacgataaagagaaggaatcacttctcaagaagttcagtattgaggagaaacaacttcctcggttatcgagcaaagacccgattgtgcgatactatggactagagacagggcaagtcatgaaggtcacatacaaagacgagctcagtgagtcgcatgttacataccgatgcgtttcttaaactcgttttgtttatattttcagctctttctttgtgtagcaatttatctgtaacatgttttgatgtaaaaacctgtaatgtgtttcttgtggtctctaaaccaaacaattttgatagttaattaatgtgtggttaacataaatacacaactctgtttaatagtttacaaaaacatagaaagcttggtcaaaacaaaacaatggtcaactatggacgatggtcgaatctggctgattcatgtttgacccatgagttgactttctcagcttcatggccaagtctttgctcctcccgtctggccgccttaagctgatgctcttgctccttcacggaaaaggtgcttgtgtccgatagatacttgtcgtcgccggtttgccacctccggtcgctagtgctccccatcgtactacgtctggtgctatctggatcgcgagaacagcacaaacttgatcccatgtggttcaaaactaaaatctttgatgaaaagaattattcagatacgaaaatagatgaaagtttaagaacaaatgagatagagacagaagggttggtttagtgttggaccaaattatgtatttgctgaaataattagtggttttgaaatttttt
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@meso_cacase at
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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