2024-09-28 11:20:37, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_128854 3123 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana Argonaute family protein (AGO6), mRNA. ACCESSION NM_128854 VERSION NM_128854.4 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 3123) AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D., Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V., Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L., Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L., Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H., Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D., Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and Venter,J.C. TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana JOURNAL Nature 402 (6763), 761-768 (1999) PUBMED 10617197 REFERENCE 2 (bases 1 to 3123) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3123) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 3123) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003071). On Sep 12, 2016 this sequence version replaced NM_128854.3. FEATURES Location/Qualifiers source 1..3123 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="2" /ecotype="Columbia" gene 1..3123 /gene="AGO6" /locus_tag="AT2G32940" /gene_synonym="ARGONAUTE 6; T21L14.12; T21L14_12" /note="Encodes a nuclear localized 879-amino-acid protein that contains conserved PAZ and PIWI domains that is important for the accumulation of specific heterochromatin-related siRNAs, and for DNA methylation and transcriptional gene silencing." /db_xref="Araport:AT2G32940" /db_xref="GeneID:817856" /db_xref="TAIR:AT2G32940" CDS 185..2821 /gene="AGO6" /locus_tag="AT2G32940" /gene_synonym="ARGONAUTE 6; T21L14.12; T21L14_12" /inference="Similar to RNA sequence, EST:INSD:DR383728.1,INSD:DR363588.1,INSD:EL108990.1" /note="ARGONAUTE 6 (AGO6); CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1785 (InterPro:IPR014811), Stem cell self-renewal protein Piwi (InterPro:IPR003165), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Argonaute/Dicer protein, PAZ (InterPro:IPR003100); BEST Arabidopsis thaliana protein match is: Argonaute family protein (TAIR:AT5G21150.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink)." /codon_start=1 /product="Argonaute family protein" /protein_id="NP_180853.2" /db_xref="Araport:AT2G32940" /db_xref="GeneID:817856" /db_xref="TAIR:AT2G32940" /translation="
METSSSLPLSPISIEPEQPSHRDYDITTRRGVGTTGNPIELCTNHFNVSVRQPDVVFYQYTVSITTENGDAVDGTGISRKLMDQLFKTYSSDLDGKRLAYDGEKTLYTVGPLPQNEFDFLVIVEGSFSKRDCGVSDGGSSSGTCKRSKRSFLPRSYKVQIHYAAEIPLKTVLGTQRGAYTPDKSAQDALRVLDIVLRQQAAERGCLLVRQAFFHSDGHPMKVGGGVIGIRGLHSSFRPTHGGLSLNIDVSTTMILEPGPVIEFLKANQSVETPRQIDWIKAAKMLKHMRVKATHRNMEFKIIGLSSKPCNQQLFSMKIKDGEREVPIREITVYDYFKQTYTEPISSAYFPCLDVGKPDRPNYLPLEFCNLVSLQRYTKPLSGRQRVLLVESSRQKPLERIKTLNDAMHTYCYDKDPFLAGCGISIEKEMTQVEGRVLKPPMLKFGKNEDFQPCNGRWNFNNKMLLEPRAIKSWAIVNFSFPCDSSHISRELISCGMRKGIEIDRPFALVEEDPQYKKAGPVERVEKMIATMKLKFPDPPHFILCILPERKTSDIYGPWKKICLTEEGIHTQCICPIKISDQYLTNVLLKINSKLGGINSLLGIEYSYNIPLINKIPTLILGMDVSHGPPGRADVPSVAAVVGSKCWPLISRYRAAVRTQSPRLEMIDSLFQPIENTEKGDNGIMNELFVEFYRTSRARKPKQIIIFRDGVSESQFEQVLKIEVDQIIKAYQRLGESDVPKFTVIVAQKNHHTKLFQAKGPENVPAGTVVDTKIVHPTNYDFYMCAHAGKIGTSRPAHYHVLLDEIGFSPDDLQNLIHSLSYVNQRSTTATSIVAPVRYAHLAAAQVAQFTKFEGISEDGKVPELPRLHENVEGNMFFC"
misc_feature 227..2818 /gene="AGO6" /locus_tag="AT2G32940" /gene_synonym="ARGONAUTE 6; T21L14.12; T21L14_12" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" ORIGIN
aagtgaaatatattttaattttcccatcactggaaacgttccctccattcttttgcttgtctgggaaacccaaagagactgtgacggagaagagaaatgagctaaataaattcctctctttgattcaccggaaccctagaaatcctcttcttaattctttcaaagattattttcccctggaaggatggagacatcttcatctctgccactgtcacccataagtatagaaccagaacagcccagccatcgagattatgacatcacaactagacgtggggttggaaccacaggcaacccaatagaattgtgcaccaatcactttaatgtttctgtgagacagccggatgtagtattttaccagtacactgttagtatcaccacagaaaacggtgatgctgttgatgggacaggaataagcagaaagcttatggaccaactattcaagacttactcttctgatcttgatggtaaaaggttggcatatgatggagagaagactttatatactgttggtcctctaccacagaacgaatttgactttctagtcatcgtggaagggtcattttcaaaacgtgattgtggtgtctctgatggtggtagttcttccggtacttgcaagcgatcaaaacgttctttcttgccaagaagttacaaggttcagatacattatgctgcagaaataccgttgaagactgttcttggcactcagagaggagcttatacaccagataagagtgctcaggatgcacttagagtgcttgacattgtactgaggcagcaagcagctgaaaggggatgccttttggtcagacaggcatttttccatagcgatgggcaccccatgaaagttggaggaggtgttataggtattcgaggtttacattcgagctttcgtccaactcatggaggactctcgcttaacattgatgtgtcaacaacaatgatcttagaacctggtccagttattgaattcctgaaagccaatcagagtgttgagacaccacggcaaatcgactggattaaggctgcgaaaatgcttaaacatatgagggttaaggcaacacaccgtaacatggaatttaaaattataggtctaagttcgaaaccgtgcaatcagcaactgttttcaatgaagattaaagatggtgaacgtgaggtacctattagagagattactgtgtatgactatttcaagcaaacctacacagagcctatttcttctgcgtactttccatgccttgatgttggcaagccagatcggcccaactatcttccactggagttttgtaatcttgtatctctgcaacgttatacaaaaccattgtcagggaggcaaagagttttacttgttgaaagttcaagacaaaaacctctagagagaattaaaacactcaatgatgcaatgcatacctactgctatgacaaggacccatttttggctggatgtggcatctccattgaaaaagaaatgactcaagttgaaggccgtgttctcaagcccccaatgctgaagtttggcaagaatgaagattttcaaccttgcaacggacggtggaactttaacaacaagatgcttctagaaccaagagctattaaaagctgggctatcgtcaacttttcttttccatgcgacagtagtcacatttcccgtgagcttataagctgtggcatgaggaaaggcattgaaattgatcgaccttttgcactagttgaagaggatccacagtacaaaaaagcaggtcctgttgaaagggtagaaaaaatgattgcaacgatgaagttaaaatttccagatcctcctcattttatcctctgtattctgccagaacggaaaacttctgatatctatggtccctggaagaagatatgcctcactgaagaagggatccacacacaatgcatctgcccaatcaagatcagtgaccaatatctcaccaatgtacttctgaagataaattcgaagcttggaggcatcaattctctgttgggaatagagtactcttacaacattccattgataaacaaaattcccaccttgattttgggtatggatgtatctcatgggcctccaggtcgggcagatgttccttcagtagcagcggttgttggttcaaaatgctggcccttaatctcaaggtatagggcagctgtaagaactcagtcaccacgtctggagatgattgattcgctcttccaacctatcgagaacactgagaaaggagataacggtatcatgaacgaattatttgtagagttctatcggacaagcagggcacggaaacctaagcagattatcattttcagggatggtgtgagtgaatcacagttcgagcaagtcttgaagatcgaagtggaccaaattataaaggcgtatcaacgtcttggtgaatctgatgtgccaaaattcactgtcattgtggctcagaagaaccaccacaccaagttgtttcaagctaagggtcctgaaaatgttcctgcaggaactgtcgtggacaccaagatcgtacacccgacaaactacgatttttacatgtgtgctcatgcaggaaaaataggaacttcaagaccggctcattaccatgtattacttgatgagattggtttctcccccgatgacttgcagaatctcatccattctctctcctatgtcaaccaacgtagcacaactgcaacttcgatcgtggctccagtacgatacgctcatcttgcagcagctcaagttgcgcaattcacaaagtttgaaggtatatcggaggacgggaaagttccagagcttccacgtctgcacgagaatgtcgaaggcaacatgttcttctgctgagtacatataagtagttctgcttcctccctagtctaaacccaaaccctcctctttagaggaagtttatcattttgcatatatgcaatcatcaccgtacagtttcattagaagtaagaagaaagatcctcgcgtagattaagaggctcattggcttattgatagcccaagtttgcttactaaacggcagcgatttttgcgtttagcttttggatttttcaatacgttatattaaattttcttttttgttttgtgacgggactcacaaagggaaatgaaaagtgagaaaaactcttgacgtaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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