2024-09-29 08:14:36, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_128783 4480 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana early endosome antigen (AT2G32240), mRNA. ACCESSION NM_128783 VERSION NM_128783.5 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 4480) AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D., Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V., Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L., Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L., Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H., Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D., Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and Venter,J.C. TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana JOURNAL Nature 402 (6763), 761-768 (1999) PUBMED 10617197 REFERENCE 2 (bases 1 to 4480) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4480) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 4480) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003071). On Jun 19, 2009 this sequence version replaced NM_128783.4. FEATURES Location/Qualifiers source 1..4480 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="2" /ecotype="Columbia" gene 1..4480 /locus_tag="AT2G32240" /gene_synonym="F22D22.1; F22D22_1" /db_xref="Araport:AT2G32240" /db_xref="GeneID:817784" /db_xref="TAIR:AT2G32240" CDS 164..4165 /locus_tag="AT2G32240" /gene_synonym="F22D22.1; F22D22_1" /inference="Similar to RNA sequence, EST:INSD:EH852442.1,INSD:BP809116.1,INSD:ES025317.1, INSD:CD534513.1,INSD:BP621835.1,INSD:EL090901.1, INSD:ES062676.1,INSD:AV545885.1,INSD:EL341238.1, INSD:CF774036.1,INSD:EL328862.1,INSD:EH956110.1, INSD:AV806979.1,INSD:BX839802.1,INSD:AV530154.1, INSD:EL301270.1,INSD:ES068454.1,INSD:AV524066.1, INSD:BP614052.1,INSD:DR360471.1,INSD:CD534460.1, INSD:R30330.1,INSD:AV806610.1,INSD:ES107423.1, INSD:EH986910.1,INSD:BU635663.1,INSD:EG520962.1, INSD:BP615095.1,INSD:BP604038.1,INSD:EL229137.1, INSD:AV816620.1,INSD:EH890295.1,INSD:EL222763.1, INSD:EL331427.1,INSD:EH959808.1,INSD:EG520961.1, INSD:AV790321.1,INSD:EL189742.1,INSD:ES105313.1, INSD:EL273712.1,INSD:AV545801.1,INSD:EG430278.1, INSD:AV545911.1,INSD:EG520963.1,INSD:EL277958.1, INSD:CD534661.1,INSD:AI996654.1,INSD:EL301576.1, INSD:ES062557.1,INSD:EL091331.1,INSD:AV554916.1, INSD:AV796895.1,INSD:EL015940.1,INSD:EL131657.1, INSD:CD529316.1,INSD:AV826967.1,INSD:BP575184.1, INSD:EH800442.1,INSD:EL077870.1,INSD:BX835795.1, INSD:CD530768.1,INSD:AV783868.1,INSD:EL236805.1, INSD:EL126175.1,INSD:EH819804.1,INSD:EG430281.1, INSD:EG430286.1,INSD:AV554892.1,INSD:Z33836.1, INSD:EG430280.1,INSD:EL235290.1,INSD:CD534679.1, INSD:EH940199.1,INSD:AV825164.1,INSD:EL125505.1, INSD:CD530500.1,INSD:EL115049.1,INSD:AV822984.1, INSD:BP621668.1,INSD:AV546307.1,INSD:EH851125.1, INSD:DR360470.1,INSD:EH849761.1,INSD:H76467.1, INSD:EL298866.1,INSD:Z34716.1,INSD:CB258259.1, INSD:AV547030.1,INSD:EL210732.1,INSD:EH882690.1, INSD:BP783632.1,INSD:W43372.1,INSD:EL095204.1, INSD:EL068061.1,INSD:CD532876.1,INSD:EL011242.1, INSD:AV546557.1,INSD:N95876.1,INSD:BE662903.1, INSD:BP806056.2,INSD:CD530051.1,INSD:EG430279.1, INSD:BP617957.1,INSD:AV554779.1,INSD:EL149455.1, INSD:EG430275.1,INSD:EL270552.1,INSD:EH874675.1, INSD:EL217569.1,INSD:EH912112.1,INSD:ES142033.1" /inference="similar to RNA sequence, mRNA:INSD:AY057490.1,INSD:AY093081.1,INSD:AY219117.1, INSD:AY128767.1,INSD:AK226327.1,INSD:AY219116.1" /note="FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05320.3); Has 470429 Blast hits to 168274 proteins in 4282 species: Archae - 6896; Bacteria - 131956; Metazoa - 175525; Fungi - 33166; Plants - 25441; Viruses - 2243; Other Eukaryotes - 95202 (source: NCBI BLink)." /codon_start=1 /product="early endosome antigen" /protein_id="NP_565741.4" /db_xref="Araport:AT2G32240" /db_xref="GeneID:817784" /db_xref="TAIR:AT2G32240" /translation="
MEEATQVTSSEVPVVKGDVDDLKTADISVKAVNGEVPKEEKEEEDGEFIKVEKEAFDAKDDAEKADHVPVEEQKEVIERSSSGSQRELHESQEKAKELELELERVAGELKRYESENTHLKDELLSAKEKLEETEKKHGDLEVVQKKQQEKIVEGEERHSSQLKSLEDALQSHDAKDKELTEVKEAFDALGIELESSRKKLIELEEGLKRSAEEAQKFEELHKQSASHADSESQKALEFSELLKSTKESAKEMEEKMASLQQEIKELNEKMSENEKVEAALKSSAGELAAVQEELALSKSRLLETEQKVSSTEALIDELTQELEQKKASESRFKEELSVLQDLDAQTKGLQAKLSEQEGINSKLAEELKEKELLESLSKDQEEKLRTANEKLAEVLKEKEALEANVAEVTSNVATVTEVCNELEEKLKTSDENFSKTDALLSQALSNNSELEQKLKSLEELHSEAGSAAAAATQKNLELEDVVRSSSQAAEEAKSQIKELETKFTAAEQKNAELEQQLNLLQLKSSDAERELKELSEKSSELQTAIEVAEEEKKQATTQMQEYKQKASELELSLTQSSARNSELEEDLRIALQKGAEHEDRANTTHQRSIELEGLCQSSQSKHEDAEGRLKDLELLLQTEKYRIQELEEQVSSLEKKHGETEADSKGYLGQVAELQSTLEAFQVKSSSLEAALNIATENEKELTENLNAVTSEKKKLEATVDEYSVKISESENLLESIRNELNVTQGKLESIENDLKAAGLQESEVMEKLKSAEESLEQKGREIDEATTKRMELEALHQSLSIDSEHRLQKAMEEFTSRDSEASSLTEKLRDLEGKIKSYEEQLAEASGKSSSLKEKLEQTLGRLAAAESVNEKLKQEFDQAQEKSLQSSSESELLAETNNQLKIKIQELEGLIGSGSVEKETALKRLEEAIERFNQKETESSDLVEKLKTHENQIEEYKKLAHEASGVADTRKVELEDALSKLKNLESTIEELGAKCQGLEKESGDLAEVNLKLNLELANHGSEANELQTKLSALEAEKEQTANELEASKTTIEDLTKQLTSEGEKLQSQISSHTEENNQVNAMFQSTKEELQSVIAKLEEQLTVESSKADTLVSEIEKLRAVAAEKSVLESHFEELEKTLSEVKAQLKENVENAATASVKVAELTSKLQEHEHIAGERDVLNEQVLQLQKELQAAQSSIDEQKQAHSQKQSELESALKKSQEEIEAKKKAVTEFESMVKDLEQKVQLADAKTKETEAMDVGVKSRDIDLSFSSPTKRKSKKKPEASLSSSSSSGNVTTPTQTASTSHLMTVKIVTGVALISVIIGIILGRKY"
misc_feature <374..2677 /locus_tag="AT2G32240" /gene_synonym="F22D22.1; F22D22_1" /note="chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168" /db_xref="CDD:274008" misc_feature 1634..3901 /locus_tag="AT2G32240" /gene_synonym="F22D22.1; F22D22_1" /note="chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168" /db_xref="CDD:274008" ORIGIN
ctctcacacacacccaatttgcatttctttcgtcatcatcatctactctttctgcgtttttcccagctgaataatctaaacaaggaaaagtaaaacagagtaccaatctcagattcatcagctccacttgaatttaaagtagccataactgttcgatcataggatggaagaagcaactcaagtaacgagttctgaggtccctgtagtgaaaggtgatgttgatgaccttaagacagctgatatttccgtcaaggctgtgaatggagaagtgccaaaggaggagaaagaagaggaagatggggaattcataaaagttgagaaggaagcttttgatgccaaggatgatgcggagaaagcagatcatgttcctgttgaagagcaaaaggaagttattgaaagaagctcgagtggttcacagagagaactacatgaatcacaagaaaaggcaaaagaactagagctcgaattggaaagagttgcaggggaactaaaacggtatgaatctgaaaatacccatttgaaggatgagcttttgtctgcgaaagagaagttagaagaaacggaaaagaagcatggagatcttgaagttgtccaaaagaagcagcaagagaaaattgttgaaggggaagagagacacagctcacagttaaagtccttggaagatgctttgcagtcacatgatgcgaaagataaggaactaactgaagttaaggaagcttttgatgcgttgggcatagaactcgagagctcacgaaagaagttgatagagttggaggaggggctaaaacgttcagctgaagaggctcagaaatttgaagagctgcataagcaaagtgcttctcatgctgactctgagtcgcagaaggctttggaattttcggagctgcttaaatcgacaaaagagagtgccaaggaaatggaggaaaaaatggcgtccctgcaacaagaaatcaaggagctcaatgagaagatgtctgaaaacgaaaaggttgaagctgccttaaagagtagtgcgggagaattagctgcagtgcaagaggaattggcactttcaaaatctcgtttgttagagacggaacaaaaagtgtcttccacagaagccctcattgatgaactgactcaggaacttgagcagaagaaagcttccgaatctcggttcaaggaagagttatccgttctccaagatttggatgctcagaccaaaggtcttcaggctaaactttctgaacaggaaggtattaattcaaagcttgcggaagaactcaaggagaaggaacttctggaatccttatcaaaagaccaagaagagaagctgagaactgcaaatgagaagttggctgaagttttgaaagaaaaagaagcgcttgaagcaaatgtagcagaggtcacaagtaatgtagcaacagtaacagaggtctgcaatgaactagaagagaaactgaagacctcagatgagaatttctccaaaacagatgctcttctttctcaagctttgtcaaacaactctgagcttgaacagaaactgaaatcgctggaggagcttcattctgaagctggatctgcagcagcagctgctacccagaagaaccttgagctagaggatgttgttcggtcctctagtcaagcagcagaagaagccaaatcacagataaaagagctggagacaaagttcactgcagctgaacaaaagaacgcggagcttgagcagcaactgaatttattgcagctgaaaagtagtgatgcagaacgcgagttgaaggaactctccgagaaatcatctgaactacaaactgctattgaagttgccgaagaagagaaaaaacaggcgaccactcagatgcaggaatacaaacaaaaagcatcagaattggaattgtctctgacccaatcatcggccagaaattcagagcttgaagaagatttgagaatcgctttgcagaagggtgcagaacatgaagaccgagctaatacaactcaccagcgcagtattgaactagaaggtctttgtcaatcatcacagtcaaaacatgaagacgcagaaggaagattaaaagacttggagcttctactccagacagaaaagtacagaattcaggaacttgaggagcaggttagctcgctagaaaagaagcatggggaaactgaagcagattctaaaggttacttgggtcaggtggctgagcttcaatccacactagaggcatttcaagtgaaaagttcaagcctcgaagctgctttaaacatcgcaactgaaaacgagaaagaactgacagaaaatctgaacgctgtgacgagtgagaaaaagaaattagaggcaacagtggatgagtacagcgtgaagatcagtgagtctgagaatctgttagaaagtatcaggaatgaattgaatgtcacacaaggaaagttggagagtattgaaaatgatctgaaagctgctggcttacaggaaagtgaagtaatggagaaactgaagtctgctgaagagagtcttgagcagaaaggaagagaaatagatgaagctactacgaaacgtatggagcttgaagctttgcatcagtctttaagtatagactcagagcatagacttcaaaaggcaatggaggagttcactagcagagattcagaggccagttctttgactgagaagttgagagacttggaaggcaaaataaaatcatatgaagagcagttggctgaagcatctggcaaatcttcttctttgaaagaaaaacttgaacagactttgggaaggcttgcagctgcagaatctgttaatgaaaaactcaaacaagagtttgatcaggcacaagaaaaatctttgcaatcatcatcagagagtgaactactagcagagacaaacaaccaactcaagatcaaaattcaagagcttgaggggttaataggttctggttctgtcgagaaagaaactgcattgaaaaggttagaagaggcaatcgaaaggtttaatcagaaagaaacagaatctagtgacttggttgaaaagttaaaaacacatgaaaaccaaatcgaggagtacaaaaagctggctcatgaagcatcaggagttgcggacactagaaaagttgagcttgaagacgcgctatcaaagttgaagaatcttgaatctactattgaagagctcggggccaaatgccaggggcttgagaaagaaagtggggatttggccgaggtgaatttgaagttgaatctggaactagccaatcatggatctgaggccaacgagttgcagacaaagctctctgccttggaggccgagaaggagcaaacagccaatgagcttgaggcttcaaagacaaccatagaagatctaacaaagcagcttacctctgaaggggagaaattacagtcacagatttcttcccacactgaggagaacaaccaagtcaatgcgatgtttcagagtaccaaggaggagctgcaatcagttattgccaagcttgaagaacaactaaccgtagagagctctaaagctgatactctggtctccgagattgagaagctcagggcagtggctgctgaaaagtccgttctggaatcacattttgaagaacttgaaaaaactttgtcagaggtcaaagctcagttgaaagaaaatgtggaaaatgcagctactgcgtctgtaaaagtggcggaattgacctcaaaactgcaggaacacgaacatattgctggtgaacgagatgtgctcaacgagcaagtgcttcagcttcagaaagagcttcaagcggctcagagttccattgatgaacagaaacaagcacactcccagaagcaatcagagctggagtctgcattaaagaaatcacaagaagagattgaagctaagaaaaaggctgtcactgaatttgaatcaatggtcaaagatcttgaacagaaagtgcagctcgcagatgctaaaactaaggaaacggaggcaatggatgtaggtgtcaaatctcgagacattgacttatccttttcttctccaacgaaacgtaagagcaagaagaagccagaagcatctctttcttcttcttcgtcttcgggcaatgttactactcctactcaaacagcatcaacttcacatctcatgacagtgaagatcgtcactggagtggcgctgatctctgttatcatcggtataattcttgggagaaagtattagtctcgtcttctcagtgtggcttgatgatgttcatatctgaaatgaagatctctccttcttcatttgttttttttgggggtttttgaattttgatagcagaactaagaagctttgcgtgaatatgcttctctctctgctaatatttgcttgtggttgggttttgttttaccgggtctgggagattttgttgtaccagcccttgcttgtaggtcaagcaattgtccagatattgtattaaattaaatcaaaggtgaattaatttgataattatccaactaaaccagttggttaacaataaacccggttcaatcgacc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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