2024-09-28 09:23:31, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_128561 1321 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana Pleckstrin homology (PH) domain superfamily protein (AT2G30060), mRNA. ACCESSION NM_128561 VERSION NM_128561.5 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 1321) AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D., Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V., Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L., Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L., Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H., Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D., Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and Venter,J.C. TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana JOURNAL Nature 402 (6763), 761-768 (1999) PUBMED 10617197 REFERENCE 2 (bases 1 to 1321) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1321) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 1321) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003071). On Sep 12, 2016 this sequence version replaced NM_128561.4. FEATURES Location/Qualifiers source 1..1321 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="2" /ecotype="Columbia" gene 1..1321 /locus_tag="AT2G30060" /gene_synonym="T27E13.20; T27E13_20" /db_xref="Araport:AT2G30060" /db_xref="GeneID:817557" /db_xref="TAIR:AT2G30060" CDS 232..885 /locus_tag="AT2G30060" /gene_synonym="T27E13.20; T27E13_20" /inference="Similar to RNA sequence, EST:INSD:EH871686.1,INSD:ES200539.1,INSD:DR257292.1, INSD:ES082213.1,INSD:DR257279.1,INSD:DR257297.1, INSD:DR257283.1,INSD:ES013697.1,INSD:DR257291.1, INSD:N37990.1,INSD:EL336581.1,INSD:EL273733.1, INSD:EH930703.1,INSD:BP615649.1,INSD:BP659248.1, INSD:DR257277.1,INSD:DR257289.1,INSD:DR257290.1, INSD:EH902221.1,INSD:T22134.1,INSD:DR257276.1, INSD:EL028236.1,INSD:EL289872.1,INSD:EH871800.1, INSD:BP781925.1,INSD:EG522564.1,INSD:AI995536.1, INSD:ES011802.1,INSD:BP637131.1,INSD:EL034557.1, INSD:DR257282.1,INSD:EH804090.1,INSD:EH975173.1, INSD:EL080490.1,INSD:BP610430.1,INSD:EL244528.1, INSD:BP640194.1,INSD:ES170605.1,INSD:BP855689.1, INSD:EH796903.1,INSD:EL252893.1,INSD:AV790712.1, INSD:DR257299.1,INSD:DR374499.1,INSD:AV563539.1, INSD:BP584533.1,INSD:BP618475.1,INSD:EL107214.1, INSD:ES007376.1,INSD:BE844809.1,INSD:EL337797.1, INSD:EH860796.1,INSD:CB256437.1,INSD:EH826114.1, INSD:BP811925.1,INSD:DR257278.1,INSD:DR257293.1, INSD:EG522560.1,INSD:EH922252.1,INSD:EL989746.1, INSD:DR257286.1,INSD:EH824506.1,INSD:EH865235.1, INSD:Z34213.1,INSD:DR257273.1,INSD:EL971987.1, INSD:EH933171.1,INSD:EH876841.1,INSD:EL233657.1, INSD:EL979746.1,INSD:AV559838.1,INSD:EL037984.1, INSD:AW004551.1,INSD:EG428519.1,INSD:EL119832.1, INSD:EL315562.1,INSD:BP587685.1,INSD:EL099735.1, INSD:DR257300.1,INSD:EH805207.1,INSD:DR257298.1, INSD:BP811161.1,INSD:DR257294.1,INSD:EL241743.1, INSD:DR257284.1,INSD:EL251996.1,INSD:EH922829.1, INSD:ES195513.1,INSD:BP867239.1,INSD:DR257295.1, INSD:BP645990.1,INSD:BP816318.1,INSD:EL280154.1, INSD:EL172576.1,INSD:DR257285.1,INSD:DR257296.1, INSD:EL147154.1,INSD:ES055712.1,INSD:BP796324.1, INSD:BP616706.1,INSD:EG428530.1,INSD:DR257275.1, INSD:DR257274.1,INSD:Z34627.1,INSD:BP653600.1, INSD:EL256230.1,INSD:EL216054.1,INSD:EL161504.1, INSD:CB256440.1,INSD:CB264861.1,INSD:BP600844.1, INSD:DR257280.1,INSD:BP636016.1,INSD:EG522559.1, INSD:DR257287.1,INSD:EL099126.1,INSD:EH961711.1, INSD:ES069272.1,INSD:EL239837.1,INSD:EL154759.1, INSD:DR257281.1,INSD:EL977866.1" /inference="similar to RNA sequence, mRNA:INSD:BT020304.1,INSD:AY093099.1,INSD:BT020473.1, INSD:X97378.1,INSD:BT024607.1" /note="Pleckstrin homology (PH) domain superfamily protein; FUNCTIONS IN: Ran GTPase binding; INVOLVED IN: intracellular transport, protein import into nucleus, translocation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ran binding protein 1 (InterPro:IPR000156), Pleckstrin homology-type (InterPro:IPR011993); BEST Arabidopsis thaliana protein match is: Pleckstrin homology (PH) domain superfamily protein (TAIR:AT1G07140.1); Has 1493 Blast hits to 1181 proteins in 240 species: Archae - 0; Bacteria - 5; Metazoa - 818; Fungi - 349; Plants - 153; Viruses - 2; Other Eukaryotes - 166 (source: NCBI BLink)." /codon_start=1 /product="Pleckstrin homology (PH) domain superfamily protein" /protein_id="NP_180567.1" /db_xref="Araport:AT2G30060" /db_xref="GeneID:817557" /db_xref="TAIR:AT2G30060" /translation="
MASISNEPERENRDEEETGANEDEDTGAQVAPIVRLEEVAVTTGEEDEDTILDLKSKLYRFDKDGSQWKERGAGTVKFLKHRVSGKIRLVMRQSKTLKICANHLVGSGMSVQEHAGNDKSCVWHARDFSDGELKDELFCIRFASVENCKAFMQKFKEVAESEEEKEESKDASDTAGLLEKLTVEEKESEKKPVEKAEENKKSEAVEEKKTEESVPSA"
misc_feature 310..702 /locus_tag="AT2G30060" /gene_synonym="T27E13.20; T27E13_20" /note="Ran-binding domain; Region: RanBD_RanBP1; cd13179" /db_xref="CDD:270000" misc_feature order(343..348,352..363,400..402,406..408,412..414, 433..444,493..495,499..501,505..510,514..528,535..543, 565..576,595..597,601..603,613..615,622..624,628..630, 640..642,652..654) /locus_tag="AT2G30060" /gene_synonym="T27E13.20; T27E13_20" /note="Ran#RanBP1#RanGAP complex [polypeptide binding]; other site" /db_xref="CDD:270000" misc_feature order(343..348,355..363,388..390,406..408,412..414, 430..444,454..456,487..489,493..495,499..501,505..528, 535..543,565..576,583..591,595..597,601..603,613..615, 634..636,640..642,646..648,652..654) /locus_tag="AT2G30060" /gene_synonym="T27E13.20; T27E13_20" /note="CRM1-RanBP1-RanGTP complex [polypeptide binding]; other site" /db_xref="CDD:270000" ORIGIN
aataggcccaaaagggcccattataagtttatagggtatatgtggcctataggccttgtcttagacccatttagttcttctctatagaccgtctctctttcggcgtctcgtataaaaatctcatttgcttttctacaaatcactcccaaaattctctccatcaatctctcttacacactacacaaattcaacaactgaaaccaactcagagcaaaagcttgatttgacactatggcgagcattagcaacgagcccgagcgtgagaacagagacgaagaagagactggagccaacgaagatgaagacaccggtgctcaggttgctcctatcgtcaggcttgaagaagtcgccgtcaccaccggtgaagaagacgaagacaccatcctcgatctgaaatcgaagttgtatcgatttgataaagatggaagtcagtggaaggagagaggtgctggtactgttaagtttttgaaacatagagtttctgggaagattcgtctcgttatgaggcaatcgaaaactttgaagatctgtgctaatcatcttgttggatcgggtatgagtgttcaggaacacgctgggaatgataagtcttgtgtatggcacgctcgtgatttctccgatggtgaattgaaggatgagctcttctgtatccggtttgcttcagttgagaattgcaaagcatttatgcaaaagttcaaggaagtagctgaatctgaagaagagaaagaagagagcaaagatgcctctgataccgctggtcttcttgagaagttaacagtggaagagaaggaaagtgagaagaaaccagtggagaaggcagaggaaaacaaaaagagtgaagctgttgaagaaaagaaaacagaggagtctgttccctcagcttaagatgcatgcttacacacacatacggccaggtaatcaatagcctgatgtgttttaaatccatcgaaggaagacttggcttttattttcaaattgaatacatgttttgagtcgtgttgagagtctatatgtttagtgtcacaaaagtgtcacaggtgacattttgcatattgcgagattgattttcgtgcttgtttgggtttcattatctggaagaaaaaaagagtgtattttgagctctcttatgatttttttttggaaaaagtgtggactcaagagaagattttattttgagttcacaaaaatttgtatgcatggatgattcgcgtgttctctttttaatgccagtcgtgttattgaatcactgaaaagtggttactcataattctagatatccgtagctaattggctataaaatgggtaaagttggaattaacta
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@meso_cacase at
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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