2024-09-28 09:27:54, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_125741 977 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana SAP domain-containing protein (AT5G63460), mRNA. ACCESSION NM_125741 VERSION NM_125741.5 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 977) AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E., Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K., Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S., Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M., Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R., Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J., Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J., Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L., Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B., Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E., Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A., Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M., See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L., Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R., Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R., Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N., Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B., Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H., Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W., Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M., Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S., Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K., Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C., Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P. CONSRTM Kazusa DNA Research Institute; Cold Spring Harbor and Washington University in St Louis Sequencing Consortium; European Union Arabidopsis Genome Sequencing Consortium TITLE Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 823-826 (2000) PUBMED 11130714 REFERENCE 2 (bases 1 to 977) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 977) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 977) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003076). On Sep 12, 2016 this sequence version replaced NM_125741.4. FEATURES Location/Qualifiers source 1..977 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="5" /ecotype="Columbia" gene 1..977 /locus_tag="AT5G63460" /gene_synonym="MLE2.9; MLE2_9" /db_xref="Araport:AT5G63460" /db_xref="GeneID:836465" /db_xref="TAIR:AT5G63460" CDS 170..658 /locus_tag="AT5G63460" /gene_synonym="MLE2.9; MLE2_9" /inference="Similar to RNA sequence, EST:INSD:ES017831.1,INSD:ES060927.1,INSD:EL005803.1, INSD:ES117466.1,INSD:ES059921.1,INSD:R84204.1, INSD:DR287749.1,INSD:ES018686.1,INSD:BP855168.1, INSD:ES214556.1,INSD:ES200628.1,INSD:EL978216.1, INSD:AV552827.1,INSD:EL193226.1,INSD:DR381970.1, INSD:ES123845.1,INSD:ES160271.1,INSD:EH838951.1" /inference="similar to RNA sequence, mRNA:INSD:BX834104.1,INSD:AK176712.1,INSD:BT014767.1, INSD:BT015747.1,INSD:AK176839.1,INSD:BX833776.1" /note="SAP domain-containing protein; FUNCTIONS IN: DNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: DNA-binding SAP (InterPro:IPR003034), Ubiquitin ligase, Det1/DDB1-complexing (InterPro:IPR018276); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink)." /codon_start=1 /product="SAP domain-containing protein" /protein_id="NP_201151.2" /db_xref="GeneID:836465" /db_xref="TAIR:AT5G63460" /db_xref="Araport:AT5G63460" /translation="
MEASSSQPSDSSDQTASKFLSDLPSRGFLSSTVVSSNPGSLRVYICEHDTSPPEGQLIKTNQQNILIRSLLLKKQKGESSSKDSKGTAEDGPKKRAANRALDDRSSAKRAANASRQEGSSSRTGERDFQSLTVEKLRAMLKEKGLPTKGRKDELIARLKSAN"
misc_feature 221..397 /locus_tag="AT5G63460" /gene_synonym="MLE2.9; MLE2_9" /note="Det1 complexing ubiquitin ligase; Region: DDA1; pfam10172" /db_xref="CDD:401980" misc_feature 413..>652 /locus_tag="AT5G63460" /gene_synonym="MLE2.9; MLE2_9" /note="poly [ADP-ribose] polymerase; Provisional; Region: PLN03124" /db_xref="CDD:215591" misc_feature 551..652 /locus_tag="AT5G63460" /gene_synonym="MLE2.9; MLE2_9" /note="SAP domain; Region: SAP; pfam02037" /db_xref="CDD:460424" ORIGIN
aaggcctaataaggcccatatctttctccaatagacgcaatcggacggtgaccatctctgtgccgctttgttcctaaacgattttctgtctgttctctctttgctctctcgccctctcttgctcttctgggttcgtcttcctcggctagggtttatcagtggtttgtcaatggaggcttcatcatctcaaccatccgattcttctgatcaaactgcttccaagttcctttctgacctcccgtctcgaggtttcttgtcttctaccgtcgtctcttccaatccgggaagcttgcgggtctacatttgtgagcatgacacatctcccccagaaggacagcttatcaaaacaaaccagcaaaatatactaatcagatctctcttgttaaagaagcaaaaaggcgaatctagttctaaagactcaaaaggaactgctgaagatggtcctaaaaagagggctgcaaatagagctctggacgacagaagctcagctaaaagagctgctaatgcatctagacaagaaggatcaagcagtcgcacaggcgaaagagactttcagtctttgaccgttgagaagctccgcgccatgctcaaggagaagggccttccaacaaaaggaagaaaggatgagctcattgcgcgtctgaagagtgccaactgaaatgaagttgagaagggtgctctggtgaatatatgtatctttagaggtttcccaaataggagagaattgttgttgttcttgatcaaatacaaatccttttgatctcatctggagaatttgttatcaggaattaggctactttagtttatgaatccggtttggtgacatttgtaatatggatttcatcttttgataaagcaaaccaaaccaaaccaggcggtcttggttaattaaaaatgtgatggaattgctttggggctggctatattaagtacaacactatggtcaatagtttaaaatcaaagaagaattataaggc
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@meso_cacase at
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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