2024-09-28 09:30:02, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_125246 1137 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana RAN binding protein 1 (RANBP1), mRNA. ACCESSION NM_125246 VERSION NM_125246.4 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 1137) AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E., Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K., Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S., Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M., Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R., Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J., Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J., Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L., Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B., Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E., Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A., Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M., See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L., Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R., Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R., Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N., Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B., Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H., Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W., Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M., Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S., Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K., Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C., Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P. CONSRTM Kazusa DNA Research Institute; Cold Spring Harbor and Washington University in St Louis Sequencing Consortium; European Union Arabidopsis Genome Sequencing Consortium TITLE Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 823-826 (2000) PUBMED 11130714 REFERENCE 2 (bases 1 to 1137) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1137) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 1137) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003076). On Sep 12, 2016 this sequence version replaced NM_125246.3. FEATURES Location/Qualifiers source 1..1137 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="5" /ecotype="Columbia" gene 1..1137 /gene="RANBP1" /locus_tag="AT5G58590" /gene_synonym="MZN1.4; MZN1_4; RAN binding protein 1" /note="Encodes a Ran-binding protein 1 homolog (RanBP1)." /db_xref="Araport:AT5G58590" /db_xref="GeneID:835973" /db_xref="TAIR:AT5G58590" CDS 222..881 /gene="RANBP1" /locus_tag="AT5G58590" /gene_synonym="MZN1.4; MZN1_4; RAN binding protein 1" /inference="Similar to RNA sequence, EST:INSD:CB258083.1,INSD:DR368251.1,INSD:BP862543.1, INSD:DR368248.1,INSD:EG456099.1,INSD:BP829690.1, INSD:ES119939.1,INSD:DR368246.1,INSD:EL033621.1, INSD:DR232250.1,INSD:DR335649.1,INSD:ES011828.1, INSD:BP592124.1,INSD:EL272938.1,INSD:EG520540.1, INSD:BP857275.1,INSD:ES162409.1,INSD:BP642495.1, INSD:ES148222.1,INSD:EL311840.1,INSD:EH884634.1, INSD:EH911258.1,INSD:DR232249.1,INSD:AV564340.1, INSD:AV814883.1,INSD:EH869895.1,INSD:EL288915.1, INSD:CB252656.1,INSD:ES209102.1,INSD:BP660647.1, INSD:AV826391.1,INSD:BP575645.1,INSD:CB253147.1, INSD:ES172946.1,INSD:BP666358.1,INSD:BP668148.1, INSD:BP586175.1,INSD:EL287839.1,INSD:DR368247.1, INSD:EL282508.1,INSD:EH969297.1,INSD:EG456098.1, INSD:DR368252.1,INSD:EL314978.1,INSD:AI997068.1, INSD:EL250713.1,INSD:DR368250.1,INSD:EG515380.1, INSD:DR368249.1,INSD:AV810429.1" /inference="similar to RNA sequence, mRNA:INSD:AY050947.2,INSD:BT024924.1,INSD:U62742.1" /note="RAN binding protein 1 (RANBP1); FUNCTIONS IN: protein binding; INVOLVED IN: protein import into nucleus, translocation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ran binding protein 1 (InterPro:IPR000156), Pleckstrin homology-type (InterPro:IPR011993); BEST Arabidopsis thaliana protein match is: Pleckstrin homology (PH) domain superfamily protein (TAIR:AT2G30060.1); Has 1560 Blast hits to 1231 proteins in 240 species: Archae - 0; Bacteria - 8; Metazoa - 836; Fungi - 365; Plants - 158; Viruses - 15; Other Eukaryotes - 178 (source: NCBI BLink)." /codon_start=1 /product="RAN binding protein 1" /protein_id="NP_200667.2" /db_xref="GeneID:835973" /db_xref="TAIR:AT5G58590" /db_xref="Araport:AT5G58590" /translation="
MASTEPERENREDETEVNEDEDTGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKMYRFDKEGNQWKERGAGTVKLLKHKETGKVRLVMRQSKTLKICANHLISSGMSVQEHSGNEKSCLWHATDFSDGELKDELFCIRFASIENCKTFMEKFTEIAESQQVGKESTQGDEAAGLIENLSVEENISEEKAKEAEEKEPAKEDKETKKEKVEEEKKTEAST"
misc_feature 291..692 /gene="RANBP1" /locus_tag="AT5G58590" /gene_synonym="MZN1.4; MZN1_4; RAN binding protein 1" /note="Ran-binding domain; Region: RanBD_RanBP1; cd13179" /db_xref="CDD:270000" misc_feature order(324..329,333..344,381..383,387..389,393..395, 414..425,474..476,480..482,486..491,495..509,516..524, 546..557,576..578,582..584,594..596,603..605,609..611, 621..623,633..635) /gene="RANBP1" /locus_tag="AT5G58590" /gene_synonym="MZN1.4; MZN1_4; RAN binding protein 1" /note="Ran#RanBP1#RanGAP complex [polypeptide binding]; other site" /db_xref="CDD:270000" misc_feature order(324..329,336..344,369..371,387..389,393..395, 408..425,435..437,468..470,474..476,480..482,486..509, 516..524,546..557,564..572,576..578,582..584,594..596, 615..617,621..623,627..629,633..635) /gene="RANBP1" /locus_tag="AT5G58590" /gene_synonym="MZN1.4; MZN1_4; RAN binding protein 1" /note="CRM1-RanBP1-RanGTP complex [polypeptide binding]; other site" /db_xref="CDD:270000" ORIGIN
accaaaatcatgaattgtcgtatagggccttaatgggcttaaatgaccgagataatgacctgttagcccactagagataattcagaagcctaactttggatataaagtttaaaaaccctggttccagttttttcttctggttctcgaaacttcttctcccaaattgaacaaccaaagaagttgcagagcacacacacacactttcaagtttcaatacagagatggcgagcactgagccagagcgtgagaaccgtgaagatgaaaccgaagtcaacgaagatgaagacaccggagctcaggtagctccgatcgttaggcttgaagaggttgcagtcaccaccggcgaagaagatgaagacgccgtcctcgatctgaaatcgaagatgtatcgattcgataaagaagggaaccaatggaaggagagaggagctggaactgtgaagttattgaagcataaggaaactggaaaagttcgtcttgttatgagacaatctaaaaccctaaagatctgtgccaatcacctcatttcgtctgggatgagtgttcaggaacatagtgggaatgaaaagtcttgtttatggcacgctactgatttctccgacggcgagttgaaagatgagcttttctgcattcgatttgcttccattgagaattgcaaaacatttatggagaagttcactgaaatagctgaaagccagcaagtagggaaagagagcacccagggcgacgaggctgctggtttaatagagaatctttcggttgaggaaaatataagtgaggagaaagccaaggaagcagaagagaaagagcctgcaaaggaagataaagaaacaaaaaaggagaaggtagaagaagagaagaaaacagaggcaagcacttaagtgatcaaattaaaattggttgttggcatcactaagtgtgctttgctttattttaatatattatacttggcactgaacatgatggtagcttcaaaagtttgagtctttgcgctgtgttagagaaagagaatcttaagatttttttttatgttgttgctgtgtaagtgtttgactattgtgtcgtctctttactgtgtcaatttggtttaagataatagtattcggcatcaaattagtatccttgctttcatcttca
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]