2024-09-28 09:26:14, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_123358 697 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana thioredoxin 2 (TRX2), mRNA. ACCESSION NM_123358 VERSION NM_123358.4 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 697) AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E., Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K., Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S., Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M., Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R., Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J., Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J., Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L., Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B., Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E., Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A., Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M., See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L., Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R., Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R., Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N., Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B., Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H., Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W., Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M., Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S., Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K., Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C., Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P. CONSRTM Kazusa DNA Research Institute; Cold Spring Harbor and Washington University in St Louis Sequencing Consortium; European Union Arabidopsis Genome Sequencing Consortium TITLE Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 823-826 (2000) PUBMED 11130714 REFERENCE 2 (bases 1 to 697) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 697) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 697) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003076). On Sep 12, 2016 this sequence version replaced NM_123358.3. FEATURES Location/Qualifiers source 1..697 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="5" /ecotype="Columbia" gene 1..697 /gene="TRX2" /locus_tag="AT5G39950" /gene_synonym="Arabidopsis thioredoxin h2; ATH2; ATTRX2; ATTRXH2; MYH19.110; MYH19_110; THIOREDOXIN; thioredoxin 2; THIOREDOXIN H2; TRXH2" /note="encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells." /db_xref="Araport:AT5G39950" /db_xref="GeneID:833992" /db_xref="TAIR:AT5G39950" CDS 98..499 /gene="TRX2" /locus_tag="AT5G39950" /gene_synonym="Arabidopsis thioredoxin h2; ATH2; ATTRX2; ATTRXH2; MYH19.110; MYH19_110; THIOREDOXIN; thioredoxin 2; THIOREDOXIN H2; TRXH2" /inference="Similar to RNA sequence, EST:INSD:ES028931.1,INSD:DR306666.1,INSD:DR319589.1, INSD:EH822474.1,INSD:BP823203.1,INSD:EL184925.1, INSD:EH951383.1,INSD:BP861002.1,INSD:DR319590.1, INSD:DR319607.1,INSD:DR319611.1,INSD:EG457699.1, INSD:DR319618.1,INSD:BP653143.1,INSD:BP868978.1, INSD:DR319586.1,INSD:ES049470.1,INSD:EL098702.1, INSD:EL282446.1,INSD:DR186386.1,INSD:BP655296.1, INSD:EL286657.1,INSD:EL218603.1,INSD:EL237153.1, INSD:ES011538.1,INSD:EH985614.1,INSD:ES009419.1, INSD:ES135292.1,INSD:AV813766.1,INSD:BP622008.1, INSD:BP627812.1,INSD:DR361084.1,INSD:ES207590.1, INSD:DR240842.1,INSD:AV790184.1,INSD:DR319610.1, INSD:AV823064.1,INSD:BP819308.1,INSD:ES120895.1, INSD:DR371264.1,INSD:ES178060.1,INSD:DR319616.1, INSD:CD530231.1,INSD:DR319609.1,INSD:CK121279.1, INSD:EL324042.1,INSD:EL048513.1,INSD:DR319606.1, INSD:DR319619.1,INSD:DR319592.1,INSD:DR319595.1, INSD:EL074135.1,INSD:ES030032.1,INSD:CD531265.1, INSD:EL329472.1,INSD:DR319612.1,INSD:BP845103.1, INSD:DR319596.1,INSD:CD531294.1,INSD:DR240843.1, INSD:DR319604.1,INSD:DR319608.1,INSD:DR306668.1, INSD:DR319587.1,INSD:DR319602.1,INSD:EH921884.1, INSD:DR353268.1,INSD:EG419593.1,INSD:ES204466.1, INSD:BP637392.1,INSD:DR319614.1,INSD:BP646058.1, INSD:EH881250.1,INSD:DR319600.1,INSD:BP641909.1, INSD:BP623480.1,INSD:AI999303.1,INSD:EL202093.1, INSD:EH918298.1,INSD:ES197508.1,INSD:DR306665.1, INSD:ES077032.1,INSD:ES167893.1,INSD:BP624034.1, INSD:DR319588.1,INSD:DR379059.1,INSD:BP591556.1, INSD:ES203985.1,INSD:DR382632.1,INSD:AV783968.1, INSD:BP622625.1,INSD:DR319598.1,INSD:DR319613.1, INSD:BP571803.1,INSD:ES212506.1,INSD:DR319599.1, INSD:BP841774.1,INSD:EH878483.1,INSD:EL207711.1, INSD:BP847750.1,INSD:BP844697.1,INSD:DR240841.1, INSD:EL145744.1,INSD:DR319601.1,INSD:DR319617.1, INSD:BP635096.1,INSD:EL089354.1,INSD:BP863847.1, INSD:EL062116.1,INSD:ES075573.1,INSD:ES113791.1, INSD:BP637157.1,INSD:BP631127.1,INSD:DR380777.1, INSD:EG500651.1,INSD:EH933084.1,INSD:DR240840.1, INSD:ES200589.1,INSD:DR319615.1,INSD:DR306664.1, INSD:EG527088.1,INSD:EH867008.1,INSD:EL184389.1, INSD:DR319593.1,INSD:DR306669.1,INSD:EG432074.1, INSD:EG500648.1,INSD:ES148555.1,INSD:DR319603.1, INSD:DR319597.1,INSD:BP667520.1,INSD:EL297620.1, INSD:BP611127.1,INSD:DR240844.1,INSD:CK121809.1, INSD:ES008161.1,INSD:CB074346.1,INSD:AV532488.1, INSD:DR306667.1,INSD:ES169193.1,INSD:DR372400.1, INSD:EH972907.1,INSD:EH903556.1,INSD:BP854335.2, INSD:EH892468.1,INSD:EL997487.1,INSD:DR372345.1, INSD:EL314388.1,INSD:EG457700.1,INSD:EG527099.1, INSD:BP853128.1,INSD:EL984706.1,INSD:ES152732.1, INSD:BP633327.1,INSD:EH893162.1,INSD:EG521972.1, INSD:BP843306.1,INSD:Z18522.1,INSD:EL217630.1, INSD:EG440572.1,INSD:DR319591.1,INSD:DR319605.1, INSD:BP662452.1,INSD:DR319594.1" /inference="similar to RNA sequence, mRNA:INSD:AY048235.1,INSD:AY088552.1,INSD:BX833912.1, INSD:AY113052.1,INSD:Z35475.1" /note="thioredoxin 2 (TRX2); FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: N-terminal protein myristoylation, sulfate assimilation; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin H-type 7 (TAIR:AT1G59730.1); Has 19714 Blast hits to 19583 proteins in 2950 species: Archae - 262; Bacteria - 11021; Metazoa - 1828; Fungi - 880; Plants - 1790; Viruses - 14; Other Eukaryotes - 3919 (source: NCBI BLink)." /codon_start=1 /product="thioredoxin 2" /protein_id="NP_198811.1" /db_xref="GeneID:833992" /db_xref="TAIR:AT5G39950" /db_xref="Araport:AT5G39950" /translation="
MGGALSTVFGSGEDATAAGTESEPSRVLKFSSSARWQLHFNEIKESNKLLVVDFSASWCGPCRMIEPAIHAMADKFNDVDFVKLDVDELPDVAKEFNVTAMPTFVLVKRGKEIERIIGAKKDELEKKVSKLRA"
misc_feature 212..481 /gene="TRX2" /locus_tag="AT5G39950" /gene_synonym="Arabidopsis thioredoxin h2; ATH2; ATTRX2; ATTRXH2; MYH19.110; MYH19_110; THIOREDOXIN; thioredoxin 2; THIOREDOXIN H2; TRXH2" /note="TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox...; Region: TRX_family; cd02947" /db_xref="CDD:239245" misc_feature order(272..274,281..283) /gene="TRX2" /locus_tag="AT5G39950" /gene_synonym="Arabidopsis thioredoxin h2; ATH2; ATTRX2; ATTRXH2; MYH19.110; MYH19_110; THIOREDOXIN; thioredoxin 2; THIOREDOXIN H2; TRXH2" /note="catalytic residues [active]" /db_xref="CDD:239245" ORIGIN
gcacgatgtttgaatattaaacgacacgatcgttgaccaaagaaagcagggtcgttcttaaacgcaatcagagagagaagcgagacgagagacgataatgggaggagctttatcaactgtgtttggaagtggagaagatgcaacagctgcagggaccgaatctgagccaagtcgcgtcctaaagtttagctcttccgctcggtggcaacttcatttcaacgagatcaaagaatcaaacaaactgctggtggttgatttctcggcctcatggtgcggaccatgtaggatgattgagcctgcgattcatgccatggctgataagttcaatgatgttgatttcgtcaaattagatgttgatgaacttcctgatgtggctaaagagtttaatgtgacggcaatgcctacctttgtgctggtgaaaaggggtaaagaaattgaaagaatcattggtgccaaaaaggacgaacttgagaagaaagttagcaaactcagagcataatgagcattgttaacgccttaaccaatagtcttgtgtaaactcaataataaatggtatgtttatggggaatgtgatgttctatactctctgctaatgtaagaccttctgtgtgatgccatgattgattgaaatggtttgttgaaatgcttagactctgctttcagtggtttatgatacaaagttgacaccttttcagct
//
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@meso_cacase at
DBCLS
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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