2024-09-28 11:16:10, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_122122 3075 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana Argonaute family protein (AGO9), mRNA. ACCESSION NM_122122 VERSION NM_122122.3 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 3075) AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E., Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K., Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S., Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M., Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R., Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J., Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J., Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L., Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B., Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E., Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A., Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M., See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L., Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R., Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R., Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N., Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B., Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H., Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W., Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M., Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S., Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K., Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C., Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P. CONSRTM Kazusa DNA Research Institute; Cold Spring Harbor and Washington University in St Louis Sequencing Consortium; European Union Arabidopsis Genome Sequencing Consortium TITLE Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 823-826 (2000) PUBMED 11130714 REFERENCE 2 (bases 1 to 3075) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3075) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 3075) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003076). On Sep 12, 2016 this sequence version replaced NM_122122.2. FEATURES Location/Qualifiers source 1..3075 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="5" /ecotype="Columbia" gene 1..3075 /gene="AGO9" /locus_tag="AT5G21150" /gene_synonym="ARGONAUTE 9; T10F18.180; T10F18_180" /note="AGO9-dependent sRNA silencing is crucial to specify cell fate in the Arabidopsis ovule. AGO9 is expressed in reproductive companion cells but not in the associated male or female gametes or their precursors. Therefore, AGO9 acts non-cell autonomously to silencing the activity of TEs activity in the female gametophyte." /db_xref="Araport:AT5G21150" /db_xref="GeneID:832241" /db_xref="TAIR:AT5G21150" CDS 117..2807 /gene="AGO9" /locus_tag="AT5G21150" /gene_synonym="ARGONAUTE 9; T10F18.180; T10F18_180" /inference="Similar to RNA sequence, EST:INSD:BP826570.1,INSD:ES097215.1,INSD:EL996374.1, INSD:ES119474.1,INSD:ES201950.1,INSD:ES020933.1, INSD:BP656191.1,INSD:ES062150.1,INSD:ES052355.1, INSD:ES191124.1,INSD:ES186728.1,INSD:ES050120.1, INSD:AU230389.1,INSD:ES185025.1,INSD:ES143224.1, INSD:DR363671.1,INSD:ES066965.1,INSD:EL970070.1, INSD:DR383565.1,INSD:ES162825.1,INSD:BP839592.1, INSD:EL985408.1,INSD:ES061651.1,INSD:ES091309.1, INSD:ES125610.1,INSD:BP641740.1,INSD:EL993491.1, INSD:ES105144.1,INSD:AV558852.1,INSD:AV566833.1, INSD:ES121826.1,INSD:ES141735.1,INSD:EL967036.1, INSD:ES158899.1,INSD:ES063214.1,INSD:ES093107.1, INSD:ES049930.1,INSD:ES077844.1,INSD:ES030907.1, INSD:ES200159.1,INSD:ES114983.1,INSD:ES190954.1, INSD:ES155114.1,INSD:ES130000.1,INSD:ES088691.1, INSD:ES199808.1,INSD:EH986074.1,INSD:ES042211.1, INSD:ES203087.1,INSD:ES124697.1,INSD:BP835870.1, INSD:ES197763.1,INSD:ES125774.1,INSD:ES058990.1, INSD:ES011238.1,INSD:ES017362.1,INSD:BP816954.1, INSD:AU239113.1,INSD:ES068950.1,INSD:ES120119.1, INSD:ES070060.1,INSD:EL998847.1,INSD:ES141593.1, INSD:AV567225.1,INSD:ES040022.1" /inference="similar to RNA sequence, mRNA:INSD:AK221864.1,INSD:AJ544236.1" /note="ARGONAUTE 9 (AGO9); FUNCTIONS IN: siRNA binding; INVOLVED IN: ovule development, negative regulation of transposition; LOCATED IN: cytoplasm; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1785 (InterPro:IPR014811), Stem cell self-renewal protein Piwi (InterPro:IPR003165), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Argonaute/Dicer protein, PAZ (InterPro:IPR003100); BEST Arabidopsis thaliana protein match is: Argonaute family protein (TAIR:AT2G27040.2); Has 1875 Blast hits to 1834 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 980; Fungi - 283; Plants - 463; Viruses - 0; Other Eukaryotes - 149 (source: NCBI BLink)." /codon_start=1 /product="Argonaute family protein" /protein_id="NP_197613.2" /db_xref="GeneID:832241" /db_xref="TAIR:AT5G21150" /db_xref="Araport:AT5G21150" /translation="
MDSDEPNGSGLPPPPPFVPANLVPEVEPVKKNILLPMARPRGSGSKGQKIPLLTNHFGVKFNKPSGYFFHYSVAINYEDGRPVEAKGIGRKILDKVQETYQSDLGAKYFAYDGEKTLFTVGALPSNKLDFSVVLEEIPSSRNHAGNDTNDADRKRSRRPNQTKKFMVEISYAAKIPMQAIASALQGKETENLQDALRVLDIILRQSAARQGCLLVRQSFFHNDVKNFVPIGGGVSGCRGFHSSFRTTQGGLSLNIDTSTTMIVQPGPVVDFLLANQNKKDPYGMDWNKARRVLKNLRVQITLSNREYKISGLSEHSCKDQLFTWRKPNDKGEFEEVEITVLNYYKERNIEVRYSGDFPCINVGKPKRPTYFPIEFCNLVSLQRYTKSLTNFQRAALVEKSRQKPPERMASLTKGLKDSNYNADPVLQDSGVSIITNFTQVEGRILPTPMLKVGKGENLSPIKGKWNFMRKTLAEPTTVTRWAVVNFSARCDTNTLIRDLIKCGREKGINVEPPFKDVINENPQFRNAPATVRVENMFEQIKSKLPKPPLFLLCILAERKNSDVYGPWKKKNLVDLGIVTQCIAPTRLNDQYLTNVLLKINAKLGGLNSLLAMERSPAMPKVTQVPTIIVGMDVSHGSPGQSDIPSIAAVVSSRQWPLISKYKACVRTQSRKMEMIDNLFKPVNGKDEGMFRELLLDFYYSSENRKPEHIIIFRDGVSESQFNQVLNIELDQMMQACKFLDDTWHPKFTVIVAQKNHHTKFFQSRGPDNVPPGTIIDSQICHPRNFDFYLCAHAGMIGTTRPTHYHVLYDEIGFATDDLQELVHSLSYVYQRSTTAISVVAPVCYAHLAAAQMGTVMKYEELSETSSSHGGITTPGAVPVPPMPQLHNNVSTSMFFC"
misc_feature 165..2804 /gene="AGO9" /locus_tag="AT5G21150" /gene_synonym="ARGONAUTE 9; T10F18.180; T10F18_180" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" ORIGIN
caccaaaacaaacaaaccctttcttcttcctctcataatccctctctctcttcttctctctcgctcgctgctctgtttagggtttttctcgttcgtctcttctataagtactagagatggattctgatgaaccgaatgggagtggattaccacctccaccacctttcgttccagcaaatcttgtccctgaagtggagcctgtaaaaaagaacattcttctcccaatggctcggcctcgaggcagcggctccaaaggacagaagattcctcttcttactaatcactttggagtcaagttcaacaaaccaagcggttacttctttcattacagtgttgctatcaattatgaagatggccgtccagtggaggctaaaggtatcggccgaaagattcttgacaaagttcaggagacctatcaaagtgatttgggtgccaaatactttgcttatgatggcgagaagactctcttcactgttggtgctcttcccagcaacaaacttgacttctctgttgttcttgaagaaataccttctagcagaaatcacgctggaaatgatacaaatgatgctgatagaaaaagatcaaggcgtcccaaccaaactaagaaattcatggttgagataagttatgctgcaaagatccccatgcaggctattgcaagcgctcttcaagggaaggagacagagaatcttcaagacgctctgagagtgctggatattattttgcgccagagtgcagctaggcaaggttgcctccttgttcgccagtcctttttccacaatgacgtaaagaactttgtacctattggtggaggtgtcagtggttgcagagggttccattcaagtttcagaactactcagggaggcttatccctgaatattgacacttcaactacgatgatagtacaacctggacctgtagttgatttcctgcttgctaaccagaacaagaaagatccatacggaatggactggaacaaggctcgacgtgtcctcaagaatctgagagttcaaattactctttccaatagagaatacaagataagtggactaagtgaacacagctgcaaagatcaactatttacatggaggaaacctaacgacaagggagaatttgaggaggttgagatcacagtgctcaattactataaagagcgtaacattgaagtgcgttattcaggtgacttcccttgcatcaatgttggtaagccgaagcgtcccacttacttccccattgagttctgtaatcttgtgtctctacagcgatacacaaaatcgcttaccaattttcagagggctgccctagttgaaaagtctaggcagaagccacctgaaaggatggcctcgctaaccaaaggtctgaaggacagcaattacaatgccgacccggtattgcaagatagtggtgttagcattatcaccaattttacccaagttgaaggccgtatcttaccaacaccaatgctgaaagtgggcaagggagaaaacctttccccaatcaaaggaaaatggaactttatgcgtaagacactcgctgagccaacgacggttactagatgggctgttgtgaacttctctgctcgctgtgatacaaatacacttattcgtgacttgattaaatgtggacgggagaaaggaattaatgtagagcctccattcaaggatgtcatcaacgagaatcctcagtttaggaatgcaccagctactgtgagagtagagaatatgtttgagcagataaaatccaaactcccaaagccgcctctgttccttctttgcatactcgctgaaaggaaaaactctgatgtttatggcccttggaaaaaaaagaatcttgttgatcttggaattgtgactcagtgcattgctcccaccagactgaacgatcagtatctcaccaatgttctcctgaagataaatgccaagcttggtggattgaattcgttgttagctatggagcgctcaccagcaatgccaaaagtaacgcaagttcctaccatcattgttgggatggatgtatcccatggttcccctggccagtctgatataccatcaattgctgctgttgtgagctcaagacaatggccactcatctcaaaatataaggcatgtgtacgcacacaatcacgcaaaatggaaatgattgataatctcttcaaacccgtcaatggcaaagacgaaggaatgttcagggaactcttgttagacttttactacagttcagagaataggaaaccagagcacatcattattttcagggatggtgtaagcgagtctcagttcaatcaagttcttaatattgaattggatcagatgatgcaggcatgcaagtttcttgatgatacgtggcatccgaagtttacagtgatagttgcccagaagaaccaccacacaaagttcttccagtctcgaggccctgataatgttcctccaggaacaatcattgacagccagatctgtcacccacgcaactttgatttctatctctgcgcccatgctggcatgattggaactacaaggccaacacattaccatgttctgtatgacgagattgggtttgccacagacgacctccaagaacttgtgcattctctgtcctatgtctaccagaggagcaccactgcgatctcagtcgttgcacctgtatgttacgctcatttggcagctgcacagatgggaactgtgatgaagtatgaagagttgtctgagacttcttcgagccatggaggaatcaccacacctggagcagtccctgtgccacctatgccgcagctgcacaataatgtttcaacctccatgttcttctgttgatggaacatggtccagtccacacgatagctgagtttatatgcttttgatggagaaccaacgaacttttgtttactcttctctgggtttggttcctcttttgtttttcgtcgaccctttaacattgaggagatactctttatattctgtcggtttttgtgggcgctgttggttgatactttattatgcttaatcagatttggtattttaaggcattgagttctcttctttttttaacgtcgatctgatgttgtggctgaattacatatag
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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