2024-09-28 09:31:11, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_122111 2628 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana PAZ domain-containing protein / piwi domain-containing protein (AT5G21030), partial mRNA. ACCESSION NM_122111 VERSION NM_122111.3 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 2628) AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E., Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K., Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S., Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M., Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R., Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J., Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J., Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L., Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B., Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E., Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A., Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M., See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L., Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R., Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R., Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N., Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B., Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H., Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W., Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M., Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S., Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K., Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C., Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P. CONSRTM Kazusa DNA Research Institute; Cold Spring Harbor and Washington University in St Louis Sequencing Consortium; European Union Arabidopsis Genome Sequencing Consortium TITLE Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 823-826 (2000) PUBMED 11130714 REFERENCE 2 (bases 1 to 2628) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2628) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 2628) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003076). On Sep 12, 2016 this sequence version replaced NM_122111.2. COMPLETENESS: incomplete on the 5' end. FEATURES Location/Qualifiers source 1..2628 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="5" /ecotype="Columbia" gene <1..2628 /locus_tag="AT5G21030" /gene_synonym="T10F18.3" /db_xref="Araport:AT5G21030" /db_xref="GeneID:832227" /db_xref="TAIR:AT5G21030" CDS 1..2553 /locus_tag="AT5G21030" /gene_synonym="T10F18.3" /note="PAZ domain-containing protein / piwi domain-containing protein; FUNCTIONS IN: nucleic acid binding; EXPRESSED IN: egg cell; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1785 (InterPro:IPR014811), Stem cell self-renewal protein Piwi (InterPro:IPR003165), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Argonaute family protein (TAIR:AT5G21150.1); Has 1838 Blast hits to 1796 proteins in 202 species: Archae - 2; Bacteria - 0; Metazoa - 963; Fungi - 280; Plants - 458; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink)." /codon_start=1 /product="PAZ domain-containing protein / piwi domain-containing protein" /protein_id="NP_197602.2" /db_xref="GeneID:832227" /db_xref="TAIR:AT5G21030" /db_xref="Araport:AT5G21030" /translation="
MDTTLPPPQHMEREPLKSKSSLLPMTRRGNGSKGQKILLLTNHFRVNFRKPNSHNFFHYSVTITYEDGSPLLAKGFGRKILEKVQQTCQADLGCKHFAYDGDKNLYTVGPLPRSSLDFSVVLETAPSRRNADKRLKLPHQSKKFNVAILFAPPEIPMEAIANALQGKKTKHLLDAIRVMDCILSQNAARQGCLLVRQSFFHNDAKYFANIGEGVDCCKGFHSSFRTTQGGLSLNIDVSTAMIVKPGPVVDFLIANQGVNDPFSINWKKAKNTLKNLRVKVLPSNQEYKITGLSGLHCKDQTFTWKKRNQNREFEEVEITVSDYFTRIREIELRYSGGLPCINVGKPNRPTYFPIELCELVSLQRYTKALTKFQRSNLIKESRQNPQQRIGVLTRALKTSNYNDDPMLQECGVRIGSDFTQVEGRVLPTPKLKAGKEQDIYPINGSWNFKNKPATVTRWAVVNFSARCDPQKIIDDLTRCGKMKGINVDSPYHVVFEENPQFKDATGSVRVDKMFQHLQSILGEVPPKFLLCILEKKNSDVYEKSCSMWNCECIVPPQNLNDQYLTNLLLKINAKLGGLNSVLDMELSGTMPLVMRVPTIIIGMDVSHGSPGQSDHIPSIAAVVSSREWPLISKYRACVRTQSPKVEMIDSLFKPVSDKDDQGIMRELLLDFHSSSGKKPNHIIIFRDGVSESQFNQVLNIELDQMMQINHHTKFFQTESPNNVLPGTIIDSNICHQHNNDFYLCAHAGKIGTTRPTHYHVLYDEIGFDTDQLQELVHSLSYVYQRSTTAISLVAPICYAHLAAAQMATAMKFEDMSETSSSHGGITTAGAVPVPPMPKLNTNVASSMFFC"
misc_feature 1..2550 /locus_tag="AT5G21030" /gene_synonym="T10F18.3" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" ORIGIN
atggatacgactctaccgcctcctcaacacatggaacgtgaacctttgaagagcaagagtagtcttcttccaatgactcgccgtggcaacggttccaaaggacagaagattcttctgctcactaaccacttcagagtcaacttcagaaaaccaaacagtcataatttcttccattacagcgttactatcacatatgaagatggtagtccacttttagccaaaggttttggcagaaagattcttgaaaaagttcaacagacttgtcaagctgatttgggttgcaaacattttgcttatgatggcgacaagaatctttatactgttggtcctcttcctagatccagtctagacttctctgttgttcttgaaaccgcgccttctaggagaaacgcagacaaaagactaaagcttcctcaccaatccaagaaattcaatgttgcaatcctttttgcgcctccagaaatcccaatggaagctattgcaaatgctcttcaaggaaagaaaactaaacatcttctagatgctatcagagtgatggactgtattttgagccaaaatgcagctagacaaggttgcctcctagttcggcaatctttcttccacaatgacgcaaagtactttgcgaatatcggtgaaggtgtagattgttgcaaaggatttcattcaagcttcagaactactcagggaggcttgtccctcaatattgatgtttcgactgctatgatagtaaaacctggtcctgttgttgattttcttattgcaaatcaaggtgtgaacgatccattctctattaactggaaaaaggctaaaaatactctgaaaaatcttagagttaaagtcctcccttcaaatcaagaatacaagataaccggactaagtggactacactgcaaagatcaaacgtttacttggaagaaaaggaaccaaaacagggaatttgaggaggttgagattacagtgtccgattacttcactaggatccgtgaaatcgaactgcgttactcgggtggcttaccttgtatcaatgttggtaagccaaatcgtcctacctactttcccattgagctctgtgagcttgtatctctacaacgctatactaaagcgctaaccaaattccagaggagtaaccttatcaaagaatcaaggcagaatccacaacaaagaattggtgtgttaaccagagctctcaagactagtaattataatgatgacccaatgttgcaagaatgtggtgttaggattggctctgacttcactcaagtcgaaggccgcgtgttaccaacaccaaagcttaaagctggcaaagaacaagacatctatcctattaatgggagttggaacttcaagaacaagccagccacagttactagatgggctgttgtgaacttctctgctcgctgtgacccgcaaaagattattgatgatttgaccagatgtggaaagatgaaaggaattaacgtagattctccataccatgtcgtctttgaagaaaatcctcagtttaaggatgccactggttctgtaagagttgataagatgtttcaacatttacaatcaatactcggcgaagttcctccaaaattccttctatgcatactcgaaaagaaaaactctgatgtttatgaaaaatcttgttcaatgtggaattgtgaatgtattgttcctcctcaaaacttaaatgatcagtatctcacaaatcttctactaaagataaatgccaagcttggtggattgaattcagttttggatatggagctgtcaggaacaatgcctctggtaatgagagttcctaccatcattattggaatggatgtatctcatggttctcctggacagtctgatcatataccatccattgccgcggttgtgagctccagagagtggccactgatctcaaaatacagggcttgtgtgcgtacacagtcgcctaaagttgaaatgatcgatagcctctttaaacccgtctctgacaaagatgatcaaggtatcatgagagagctcttgcttgactttcactcaagttctggaaagaaaccgaatcacattatcattttcagggatggtgtcagtgaatctcagtttaaccaagttcttaatattgaactggatcagatgatgcaaataaaccaccacacgaagttcttccaaaccgaaagccctaataatgttcttccaggaacaataattgacagcaacatctgtcaccaacacaacaacgatttctatctttgtgctcatgctggaaagattggaactacaaggccaacacattaccatgtgctctacgacgagattggatttgacacagatcaactccaagaacttgtgcattcactatcctatgtctaccagcggagcacaactgccatctctcttgttgcgccgatatgttatgctcatttggcggctgcacagatggcaactgcaatgaagtttgaggacatgtctgagacttcatcgagccacggcgggatcaccacagctggagcagtccctgtgcctcccatgccgaagctgaacaccaacgttgctagttcaatgttcttttgctgaaagaacaaaaataagcacaagtgacttggcttttcttctaatgaacaaaccaaataacaagattgtttctctcgc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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