2024-09-29 08:12:23, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_113423 1884 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana cytochrome P450, family 82, subfamily G, polypeptide 1 (CYP82G1), mRNA. ACCESSION NM_113423 VERSION NM_113423.4 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 1884) AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M., Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B., Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P., Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V., Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S., Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P., Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S., Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H., Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M., Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A., Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C., Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P., Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M., Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S., Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L., Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A., Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B., Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J., Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X., Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M., Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S., Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C., Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S., Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A., Yamada,M., Yasuda,M. and Tabata,S. CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium; Institute for Genomic Research; Kazusa DNA Research Institute TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 820-822 (2000) PUBMED 11130713 REFERENCE 2 (bases 1 to 1884) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1884) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 1884) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003074). On Sep 12, 2016 this sequence version replaced NM_113423.3. FEATURES Location/Qualifiers source 1..1884 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="3" /ecotype="Columbia" gene 1..1884 /gene="CYP82G1" /locus_tag="AT3G25180" /gene_synonym="cytochrome P450; family 82; polypeptide 1; subfamily G" /note="Encodes a cytochrome P450 monooxygenase (CYP82G1) that catalyzes the production of two volatile homoterpenes, TMTT and DMNT, although it is only likely to produce TMTT in planta. TMTT can be involved in attracting predatory insects to protect Arabidopsis plants from herbivorous pests. Homoterpene synthesis is also stimulated by fungal elicitors which increase the transcript levels of CYP82G1." /db_xref="Araport:AT3G25180" /db_xref="GeneID:822110" /db_xref="TAIR:AT3G25180" CDS 32..1579 /gene="CYP82G1" /locus_tag="AT3G25180" /gene_synonym="cytochrome P450; family 82; polypeptide 1; subfamily G" /inference="Similar to RNA sequence, EST:INSD:CB185938.1" /inference="Similar to RNA sequence, mRNA:INSD:BX822752.1" /note="''cytochrome P450, family 82, subfamily G, polypeptide 1'' (CYP82G1); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 82, subfamily C, polypeptide 4 (TAIR:AT4G31940.1); Has 33970 Blast hits to 33806 proteins in 1725 species: Archae - 58; Bacteria - 3885; Metazoa - 11872; Fungi - 7373; Plants - 9512; Viruses - 6; Other Eukaryotes - 1264 (source: NCBI BLink)." /codon_start=1 /product="cytochrome P450, family 82, subfamily G, polypeptide 1" /protein_id="NP_189154.1" /db_xref="GeneID:822110" /db_xref="TAIR:AT3G25180" /db_xref="Araport:AT3G25180" /translation="
MTFLFSTLQLSLFSLALVIFGYIFLRKQLSRCEVDSSTIPEPLGALPLFGHLHLLRGKKLLCKKLAAMSQKHGPIFSLKLGFYRLVVASDPKTVKDCFTTNDLATATRPNIAFGRYVGYNNASLTLAPYGDYWRELRKIVTVHLFSNHSIEMLGHIRSSEVNTLIKHLYKGNGGTSIVKIDMLFEFLTFNIILRKMVGKRIGFGEVNSDEWRYKEALKHCEYLAVIPMIGDVIPWLGWLDFAKNSQMKRLFKELDSVNTKWLHEHLKKRSRNEKDQERTIMDLLLDILPEDIVISGHVRDVIVKATILALTLTGSDSTSITLTWAVSLLLNNPAALEAAQEEIDNSVGKGRWIEESDIQNLKYLQAIVKETHRLYPPAPLTGIREAREDCFVGGYRVEKGTRLLVNIWKLHRDPKIWPDPKTFKPERFMEDKSQCEKSNFEYIPFGSGRRSCPGVNLGLRVVHFVLARLLQGFELHKVSDEPLDMAEGPGLALPKINPVEVVVMPRLDPKLYSLL"
misc_feature 248..1549 /gene="CYP82G1" /locus_tag="AT3G25180" /gene_synonym="cytochrome P450; family 82; polypeptide 1; subfamily G" /note="cytochrome P450 family 82; Region: CYP82; cd20654" /db_xref="CDD:410747" misc_feature order(353..355,428..430,440..442,464..466,605..607, 959..961,968..973,980..985,1160..1162,1172..1177, 1181..1183,1361..1372,1379..1393,1400..1405) /gene="CYP82G1" /locus_tag="AT3G25180" /gene_synonym="cytochrome P450; family 82; polypeptide 1; subfamily G" /note="heme binding site [chemical binding]; other site" /db_xref="CDD:410747" misc_feature order(689..691,701..703,770..772,956..958,965..970, 1175..1177) /gene="CYP82G1" /locus_tag="AT3G25180" /gene_synonym="cytochrome P450; family 82; polypeptide 1; subfamily G" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:410747" ORIGIN
attatcccatacattaaacaaagtgatcaccatgacttttctctttagtactctccagttgtctctcttctctttggcccttgtaatctttggttacattttcctcagaaaacaattgagtagatgtgaagttgatagctccacgattcctgagccattgggagctttgcctctattcggacacctccatcttttgcgtggcaaaaaactcctttgcaagaaattagctgccatgtcccaaaaacatggtcctatcttctccctcaagttagggttttataggctggttgtagccagcgacccaaaaacggtgaaagattgtttcaccaccaacgacttggctacagcaaccagacccaatatagcctttggtcggtacgtaggctacaacaatgcaagtctgactctggctccctatggagactattggcgtgagttacgtaagattgtcaccgtccatctattctcaaaccacagtatagagatgcttggtcacattcgttcttcagaagtaaacacgttgatcaaacacctatacaaagggaatggtggaacttctatagtgaagattgacatgttatttgagtttttgaccttcaatataatccttaggaagatggtggggaagaggattggtttcggtgaagtgaatagcgatgaatggcgttataaggaggccctgaagcattgcgagtacttggctgtgattcctatgataggcgacgttattccatggttgggatggttggattttgcaaaaaattctcaaatgaagagactatttaaggagcttgactcagtcaacaccaagtggctccacgaacatctcaagaagagatcaagaaatgagaaggatcaagaaagaacaatcatggatctactgctagacatcttaccagaggatattgtgataagtggacacgtacgcgatgtcattgtgaaggcaacaattttggctctcacattaacaggatcagacagcacatccatcactttgacatgggcggtatcgctgctactcaacaatccagctgctttagaagcagcacaagaagagattgataatagtgtcggcaaaggtagatggattgaagaatccgatatacaaaacctcaagtacctacaagctattgttaaggaaacgcaccgactttacccgccggctcctctaacaggaatccgcgaagcacgtgaagattgtttcgtgggaggataccgtgttgagaaaggcacacgcttgctcgtaaacatatggaaacttcatagggatcccaagatctggcctgaccccaaaacctttaagcctgagaggttcatggaggataaatcacaatgtgaaaagagcaactttgaatacattcctttcggttcgggaaggaggtcgtgtccgggagtcaatcttggtctaagagttgtacactttgtattggctagattgcttcaagggtttgagttacacaaagtgtctgatgaaccactggatatggctgaagggcctggtttagccttgccaaagattaacccggtcgaagtagttgtaatgcctcggctcgacccgaagttgtatagtttactctaaaccattgtgtactcgataattattgggagcttcttgtgatcatgcctttctgattttagacatgtatggtgtcaatggtttaaaaaaacaatttgggaaaggagagacaaccatattggaacaactttttatattgaataatattgtattaaatgctgtataaatcatatacatgcacatattgaaagaaaagttagtataaaatttagatgaaagcatatataatggttcatttatttgtttagtgaaaaaaagaaagatctttgggagaaaaggaatcacattgtaagatttttgtaacttag
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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