2024-09-28 09:26:08, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_103831 775 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana translocase of the outer mitochondrial membrane 6 (TOM6), mRNA. ACCESSION NM_103831 VERSION NM_103831.5 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 775) AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S., White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L., Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F., Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R., Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J., Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B., Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J., Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L., Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S., Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X., Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J., Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G., Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H., Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H., Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T., Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G., Fraser,C.M., Venter,J.C. and Davis,R.W. TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 816-820 (2000) PUBMED 11130712 REFERENCE 2 (bases 1 to 775) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 775) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 775) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 5 (bases 1 to 775) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003070). On Sep 12, 2016 this sequence version replaced NM_103831.4. FEATURES Location/Qualifiers source 1..775 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="1" /ecotype="Columbia" gene 1..775 /gene="TOM6" /locus_tag="AT1G49410" /gene_synonym="translocase of the outer mitochondrial membrane 6" /db_xref="Araport:AT1G49410" /db_xref="GeneID:841365" /db_xref="TAIR:AT1G49410" CDS 133..297 /gene="TOM6" /locus_tag="AT1G49410" /gene_synonym="translocase of the outer mitochondrial membrane 6" /inference="Similar to RNA sequence, EST:INSD:ES052283.1,INSD:ES019225.1,INSD:DR312449.1, INSD:DR312461.1,INSD:EL059987.1,INSD:DR256090.1, INSD:DR312465.1,INSD:EG514827.1,INSD:EL278687.1, INSD:EH903317.1,INSD:DR312453.1,INSD:AV781618.1, INSD:ES023007.1,INSD:ES038337.1,INSD:AA721847.1, INSD:ES000980.1,INSD:ES163946.1,INSD:ES127412.1, INSD:EL032695.1,INSD:AU235672.1,INSD:ES200087.1, INSD:ES119894.1,INSD:DR358166.1,INSD:EL235911.1, INSD:DR312448.1,INSD:DR373081.1,INSD:AI993871.1, INSD:DR378179.1,INSD:DR312458.1,INSD:EL158089.1, INSD:EH924359.1,INSD:EH930155.1,INSD:DR312451.1, INSD:EL992848.1,INSD:EH938035.1,INSD:EL279908.1, INSD:EL322771.1,INSD:ES007143.1,INSD:EL190236.1, INSD:ES199302.1,INSD:ES159747.1,INSD:ES177639.1, INSD:ES207323.1,INSD:EL983078.1,INSD:DR312446.1, INSD:ES191341.1,INSD:EL110806.1,INSD:DR370784.1, INSD:EL245225.1,INSD:BE662712.1,INSD:EL210655.1, INSD:ES170656.1,INSD:EH832537.1,INSD:DR312466.1, INSD:DR312470.1,INSD:ES161167.1,INSD:EH967123.1, INSD:EH853695.1,INSD:ES028963.1,INSD:ES135961.1, INSD:ES154589.1,INSD:DR312462.1,INSD:ES057396.1, INSD:DR312464.1,INSD:BP581467.1,INSD:ES135053.1, INSD:EL108698.1,INSD:DR312443.1,INSD:EH827992.1, INSD:EL289253.1,INSD:DR312469.1,INSD:DR312460.1, INSD:AV821264.1,INSD:ES192744.1,INSD:Z17477.1, INSD:AU226412.1,INSD:EL323349.1,INSD:EL978348.1, INSD:ES039201.1,INSD:ES044552.1,INSD:ES007413.1, INSD:ES212103.1,INSD:EL234665.1,INSD:BP645791.1, INSD:BE662826.1,INSD:BP651673.1,INSD:ES086304.1, INSD:DR312447.1,INSD:EL238527.1,INSD:ES119063.1, INSD:ES082698.1,INSD:EL157684.1,INSD:DR199603.1, INSD:DR312454.1,INSD:EL043888.1,INSD:EH849180.1, INSD:BP635816.1,INSD:BP859500.1,INSD:DR312442.1, INSD:ES165024.1,INSD:DR312450.1,INSD:DR312471.1, INSD:DR376629.1,INSD:BP634512.1,INSD:ES209946.1, INSD:ES212355.1,INSD:DR312444.1,INSD:EH881227.1, INSD:EL994470.1,INSD:DR312459.1,INSD:EL269095.1, INSD:DR256089.1,INSD:ES128656.1,INSD:EL255619.1, INSD:BP851531.1,INSD:EH963839.1,INSD:BP819346.1, INSD:EH968647.1,INSD:DR312473.1,INSD:ES021291.1, INSD:F19935.1,INSD:ES152149.1,INSD:AV441462.1, INSD:EH881834.1,INSD:EH806075.1,INSD:DR383067.1, INSD:EL986696.1,INSD:EL176811.1,INSD:ES137240.1, INSD:ES060373.1,INSD:ES132412.1,INSD:ES189595.1, INSD:DR312452.1,INSD:ES020174.1,INSD:EH879910.1, INSD:ES103527.1,INSD:ES005214.1,INSD:EH837269.1, INSD:AA651148.1,INSD:EH905787.1,INSD:BP857733.1, INSD:DR312445.1,INSD:EL072106.1,INSD:ES069099.1, INSD:EL017073.1,INSD:ES082311.1,INSD:DR312472.1, INSD:EH884881.1,INSD:EL312701.1,INSD:DR256088.1, INSD:DR312474.1,INSD:EL341462.1,INSD:AV831931.1, INSD:DR312440.1,INSD:EL021754.1,INSD:EH858762.1, INSD:EL271651.1,INSD:BP833278.1,INSD:AV549357.1, INSD:ES138015.1,INSD:DR312457.1,INSD:EH886268.1, INSD:DR312456.1,INSD:EH980250.1,INSD:DR312467.1, INSD:AV818228.1,INSD:EG514826.1,INSD:DR312439.1, INSD:ES031575.1,INSD:EH863235.1,INSD:ES102081.1, INSD:Z18521.1,INSD:DR312441.1,INSD:DR312463.1, INSD:EH947323.1,INSD:H36003.1" /inference="similar to RNA sequence, mRNA:INSD:BX818500.1,INSD:AF327425.1,INSD:BX816802.1, INSD:BX841903.1,INSD:AY037189.1,INSD:BX818254.1, INSD:BT002672.1,INSD:BX818499.1,INSD:AF325059.2, INSD:BX817553.1,INSD:AF324714.2,INSD:AF339720.1, INSD:BX817471.1" /note="translocase of the outer mitochondrial membrane 6 (TOM6); Has 30 Blast hits to 30 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink)." /codon_start=1 /product="translocase of the outer mitochondrial membrane 6" /protein_id="NP_564545.1" /db_xref="Araport:AT1G49410" /db_xref="GeneID:841365" /db_xref="TAIR:AT1G49410" /translation="
MFPGMFMRKPDKAEALKQLRTHVALFGSWVVIIRAAPYVLSYFSDSKDELKIDF"
ORIGIN
ttaaaaactcggcccacatctaaaaacacttatattgtgaaaaacgagacggcaaatcaatcgagggttagggttttagaatctttaaagaatcacattcacacatcagagaggaagaagaagatcgcagccatgttcccaggaatgttcatgcgaaagccagacaaagccgaggctctgaagcagctacgcactcatgtcgctctttttggcagctgggttgtcattatccgtgctgctccctacgtcctctcctatttctccgattccaaagatgagctcaagatcgatttctaaatgactctttcaattttcagcgttgaagcggtgagatagatgcattatgaagcaatggaagatatcttgtttgtttttgcaaccttcttactcttaagacctgagattacgaaatcatgagacatttagttatatagtggtgtacttttgggatttgtttttggtttatgttcttctcaccaacgttctccaatttccagcaaattaccttcggctattcactaccgatttgcagatcagattctgcccattattcttttgaatttgcaaaattttcttctcagaactagttttgtcttttgtggagcgttttaattaaaacactttttaatgaaacgagtaagttttggacatttctaaagtgttgtcttgtgattttctaaagagcaatcgacttttcgtacaggaggaagctagatgcattgaaataaaataaaataaatataaagggggagagatcgggaattgaagaagaaag
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]