2024-09-28 11:15:57, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_102866 3602 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana Argonaute family protein (AGO2), mRNA. ACCESSION NM_102866 VERSION NM_102866.3 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 3602) AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S., White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L., Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F., Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R., Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J., Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B., Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J., Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L., Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S., Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X., Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J., Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G., Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H., Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H., Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T., Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G., Fraser,C.M., Venter,J.C. and Davis,R.W. TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 816-820 (2000) PUBMED 11130712 REFERENCE 2 (bases 1 to 3602) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3602) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 3602) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 5 (bases 1 to 3602) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003070). On Sep 12, 2016 this sequence version replaced NM_102866.2. FEATURES Location/Qualifiers source 1..3602 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="1" /ecotype="Columbia" gene 1..3602 /gene="AGO2" /locus_tag="AT1G31280" /gene_synonym="argonaute 2; AtAGO2; T19E23.7; T19E23_7" /note="Encodes Argonaute gene that binds viral siRNAs and is involved in antiviral defense response. Regulates innate immunity." /db_xref="Araport:AT1G31280" /db_xref="GeneID:840016" /db_xref="TAIR:AT1G31280" CDS 274..3318 /gene="AGO2" /locus_tag="AT1G31280" /gene_synonym="argonaute 2; AtAGO2; T19E23.7; T19E23_7" /inference="Similar to RNA sequence, EST:INSD:ES206125.1,INSD:BP817081.1,INSD:ES179532.1, INSD:ES134722.1,INSD:BP648434.1,INSD:AU239324.1, INSD:ES177758.1,INSD:BP808901.2,INSD:AU230620.1, INSD:EH867161.1,INSD:EG498489.1,INSD:ES075865.1, INSD:EH952813.1,INSD:EG457867.1,INSD:BP784895.1, INSD:CD532401.1,INSD:BE526767.1,INSD:CD533470.1, INSD:BU635669.1" /inference="similar to RNA sequence, mRNA:INSD:AK118463.1,INSD:BT005914.1" /note="argonaute 2 (AGO2); FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1785 (InterPro:IPR014811), Stem cell self-renewal protein Piwi (InterPro:IPR003165), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: ARGONAUTE 3 (TAIR:AT1G31290.1); Has 30240 Blast hits to 14140 proteins in 1171 species: Archae - 11; Bacteria - 7749; Metazoa - 10383; Fungi - 2602; Plants - 5076; Viruses - 357; Other Eukaryotes - 4062 (source: NCBI BLink)." /codon_start=1 /product="Argonaute family protein" /protein_id="NP_174413.2" /db_xref="Araport:AT1G31280" /db_xref="GeneID:840016" /db_xref="TAIR:AT1G31280" /translation="
MERGGYRGGRGDGRGRGGRGYGGGGGGGEQGRDRGYGGGEQGRGRGSERGGGNRGQGRGEQQDFRSQSQRGPPPGHGGRGTTQFQQPRPQVAPQPSQAPASYAGSVGGVAGRGAWGRKPQVPSDSASPSTSTTVVSEPVRVAEVMNLKPSVQVATSDRKEPMKRPDRGGVVAVRRVNLYVNHYKVNFNPESVIRHYDVEIKGEIPTKKVSRFELAMVRDKVFTDNPDEFPLAMTAYDGQKNIFSAVELPTGSYKVEYPKTEEMRGRSYTFTIKQVNVLKLGDLKEYMTGRSSFNPRDVLQGMDVVMKEHPSKCMITVGKSFFTRETEPDEDFRFGVIAAKGYRHTLKPTAQGLSLCLDYSVLAFRKAMSVIEYLKLYFNWSDMRQFRRRDVEEELIGLKVTVNHRKNKQKLTIVGLSMQNTKDIKFDLIDQEGNEPPRKTSIVEYFRIKYGRHIVHKDIPCLDLGKNGRQNFVPMEFCDLVEGQIYPKDNLDKDSALWLKKLSLVNPQQRQRNIDKMIKARNGPSGGEIIGNFGLKVDTNMTPVEGRVLKAPSLKLAERGRVVREEPNPRQNNQWNLMKKGVTRGSIVKHWAVLDFTASERFNKMPNDFVDNLIDRCWRLGMQMEAPIVYKTSRMETLSNGNAIEELLRSVIDEASRKHGGARPTLVLCAMSRKDDGYKTLKWIAETKLGLVTQCFLTGPATKGGDQYRANLALKMNAKVGGSNVELMDTFSFFKKEDEVMFIGADVNHPAARDKMSPSIVAVVGTLNWPEANRYAARVIAQPHRKEEIQGFGDACLELVKAHVQATGKRPNKIVIFRDGVSDAQFDMVLNVELLDVKLTFEKNGYNPKITVIVAQKRHQTRFFPATNNDGSDKGNVPSGTVVDTKVIHPYEYDFYLCSHHGGIGTSKPTHYYTLWDELGFTSDQVQKLIFEMCFTFTRCTKPVSLVPPVYYADMVAFRGRMYHEASSREKNFKQPRGASTSAASLASSLSSLTIEDKAIFKLHAELENVMFFV"
misc_feature 982..1191 /gene="AGO2" /locus_tag="AT1G31280" /gene_synonym="argonaute 2; AtAGO2; T19E23.7; T19E23_7" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 1219..1371 /gene="AGO2" /locus_tag="AT1G31280" /gene_synonym="argonaute 2; AtAGO2; T19E23.7; T19E23_7" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1384..1737 /gene="AGO2" /locus_tag="AT1G31280" /gene_synonym="argonaute 2; AtAGO2; T19E23.7; T19E23_7" /note="PAZ domain; Region: PAZ; pfam02170" /db_xref="CDD:460472" misc_feature 1855..3162 /gene="AGO2" /locus_tag="AT1G31280" /gene_synonym="argonaute 2; AtAGO2; T19E23.7; T19E23_7" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2305..2307,2317..2319,2353..2364,2371..2373, 2395..2397,2404..2406,2416..2418,2428..2430) /gene="AGO2" /locus_tag="AT1G31280" /gene_synonym="argonaute 2; AtAGO2; T19E23.7; T19E23_7" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2509..2511,2515..2517,2728..2730,3133..3135) /gene="AGO2" /locus_tag="AT1G31280" /gene_synonym="argonaute 2; AtAGO2; T19E23.7; T19E23_7" /note="active site" /db_xref="CDD:240015" ORIGIN
tatttggaagttatttttctcaagtagaatactgtgaaagacgattcaacatcccttattttacggttgtgtcaaggaacattcgagaactttttttaataactccttaagggacaagttctctctgtttttcttttttcaatagcttctctgacactttattctttctttctgatattataaacctccgatttggtttagttcaaaactagaagcagcaaaattctgaacacgtaaagctttgtttcactcagtgtttcccgatcagatccaatggagagaggtggttatcgaggaggtcgtggtgatggccgtggtagaggtggccgtggttatggcggaggcggaggaggaggagaacaaggtcgtgatcgtggctacggcggcggagaacaaggtcgtggtcgtggctcagagcgaggcggcggaaatcgtggtcaaggtcgtggtgaacaacaggattttcgaagccagagtcagcggggacctccgccaggtcacggtggccgtgggacgacgcagttccaacagcctcgaccacaggtggctccgcagccgtcgcaggctccggcgagttatgccggttcagtaggaggagtcgctggtagaggcgcgtggggtcgtaagccacaggttccgtctgattcggcttctccgtccaccagcaccaccgtggtttctgaacccgttcgtgtagctgaagttatgaatctgaagccatcggtgcaagttgcgacttctgataggaaagaaccaatgaagcgacctgatagaggcggagttgtggctgtgcggcgtgttaatctatatgtgaatcattataaagtgaatttcaatcctgaaagtgttataagacattatgatgttgaaatcaaaggagaaattcctaccaagaaggtttcgaggtttgagctagctatggttagggacaaggtgttcactgacaatcccgatgagtttcccttagctatgacagcttatgatggtcagaagaacattttcagtgcggttgagttacctacggggtcatacaaggtggagtatcctaaaactgaagagatgagaggtcgaagctatacgttcactatcaaacaggtgaatgtgctgaagctaggtgacttgaaagagtacatgacagggagatcgtctttcaatccgcgtgatgtgttgcaaggaatggatgttgtgatgaaggagcatccttccaagtgtatgatcactgttggtaaaagctttttcactcgtgaaactgagccagatgaagattttcgtttcggggttatagctgcgaaagggtatcgccacactctgaagcccacagcacaaggtttgtctttgtgtttggattactcggtgttggcgttccgcaaagcaatgtcggtcattgaatacctgaagttgtactttaactggtctgatatgcgtcagtttaggaggcgtgatgtggaagaggaattgattggtttgaaagtcactgtcaatcatcggaagaacaagcagaaactcaccattgtagggctgagtatgcaaaacacaaaagacatcaaatttgatcttattgatcaagagggaaacgagccgccaaggaagacgtccattgttgagtatttcaggataaagtatggaagacacattgttcacaaggatataccttgcttggatttgggaaaaaacggtaggcaaaattttgtgcccatggaattctgtgacttggttgagggacagatatatccaaaggataacttggataaagattcagctttgtggctaaaaaagttgtcactggtcaatccacaacaaaggcagaggaatatagataagatgataaaggctcgtaatggaccgagcggtggtgaaatcattggaaactttggattgaaagtggatacaaacatgacaccggtggaaggtcgtgtactcaaggctccatcattgaagttggcagagagagggagagttgtgcgtgaggaacccaacccgagacagaacaaccaatggaaccttatgaagaagggagtcacaaggggatctatagtcaagcattgggctgtacttgacttcactgcatccgagagatttaacaagatgcctaatgactttgtggataaccttattgatcgttgttggagacttgggatgcagatggaggctcctatcgtttacaaaacatcgagaatggaaacactttctaatggtaatgctattgaggaattgcttcgatccgtgatagatgaagcttctcgtaagcatggtggggctcgtccaactcttgttctgtgtgctatgtctcggaaagacgatggctataagactctgaaatggatagccgagaccaaacttggtctggtgactcagtgtttcttgactggtcctgccactaaaggaggtgatcagtaccgggcaaatcttgccctcaagatgaacgcaaaggttggtggaagcaatgtcgagcttatggatactttctctttcttcaaaaaagaggatgaggtcatgttcattggtgctgatgtcaatcatcccgctgctcgggacaagatgagcccgtccattgttgctgttgtgggaactcttaactggcctgaagcaaatcgctatgcagctagagtcattgcccagcctcaccgcaaagaggaaatacaaggatttggcgacgcttgtttggagcttgtcaaagctcatgttcaggccacagggaaacggcctaacaagattgtgatattccgtgatggtgtcagcgatgctcagttcgatatggttctcaatgtggagttgcttgatgttaagctaacttttgagaagaatggttacaatccaaagataacggtaatcgtagcccagaaacgtcatcaaacccgtttcttcccagccacaaataatgatggaagtgataagggcaatgtgccttcaggtacggttgttgatactaaagttattcacccgtatgagtatgatttctacctctgcagtcaccacggagggatagggacaagcaaaccgactcattactacactctttgggacgaacttggattcacttcggatcaggtgcagaagctcatcttcgagatgtgcttcactttcactcgctgcaccaaacccgtctctcttgttccgccggtgtattatgctgacatggttgcttttagaggaaggatgtaccacgaggcaagctctcgtgagaagaactttaagcagccgcggggagcgtcaacctctgctgcttcgcttgcctcttcattatcttctcttacaattgaggacaaagcgattttcaagctgcatgcagagcttgagaatgttatgttcttcgtctgaagaagagagtgagtttcttttgtgttttgggtctcaagctgaacttaaacctatattcgaaatcggaacgccccaataacgcagttttaactccttttttctggtagaaaggagtttgtgcgtgaatctaattgggtttttcgtagtgtgtttctttctttttggttttggtgtgttgaaacgaatttgtaatctcttttgagcaaaaactacgtcttcttctttttttggtattattgtatttcagactctgcattcagtaattatttcatattttgctaatt
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]