2024-09-28 09:25:46, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_102029 2679 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana filament-like protein (DUF869) (AT1G21810), mRNA. ACCESSION NM_102029 VERSION NM_102029.3 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 2679) AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S., White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L., Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F., Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R., Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J., Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B., Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J., Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L., Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S., Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X., Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J., Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G., Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H., Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H., Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T., Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G., Fraser,C.M., Venter,J.C. and Davis,R.W. TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 816-820 (2000) PUBMED 11130712 REFERENCE 2 (bases 1 to 2679) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2679) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 2679) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 5 (bases 1 to 2679) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003070). On Sep 12, 2016 this sequence version replaced NM_102029.2. FEATURES Location/Qualifiers source 1..2679 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="1" /ecotype="Columbia" gene 1..2679 /locus_tag="AT1G21810" /gene_synonym="T26F17.2" /db_xref="Araport:AT1G21810" /db_xref="GeneID:838784" /db_xref="TAIR:AT1G21810" CDS 531..2420 /locus_tag="AT1G21810" /gene_synonym="T26F17.2" /inference="Similar to RNA sequence, EST:INSD:ES026607.1,INSD:ES059835.1,INSD:ES066692.1, INSD:EL995386.1,INSD:DR354895.1,INSD:AU226988.1, INSD:ES008157.1,INSD:EH949741.1,INSD:AU236163.1, INSD:EH847597.1" /inference="similar to RNA sequence, mRNA:INSD:AK228278.1,INSD:BT003117.1" /note="Plant protein of unknown function (DUF869); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF869, plant (InterPro:IPR008587); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF869) (TAIR:AT1G77580.1); Has 79141 Blast hits to 43153 proteins in 2526 species: Archae - 1269; Bacteria - 11097; Metazoa - 38829; Fungi - 6739; Plants - 4917; Viruses - 325; Other Eukaryotes - 15965 (source: NCBI BLink)." /codon_start=1 /product="filament-like protein (DUF869)" /protein_id="NP_173599.2" /db_xref="Araport:AT1G21810" /db_xref="GeneID:838784" /db_xref="TAIR:AT1G21810" /translation="
MMTGTTLILEPVMDSKDELVKQHAKVAEDAVAGWEKAENEVVELKQKLEDAADKNIVLEDRVSHLDGALKECVRQLRQFRDEQEKNIQAAVTESTKELHSANTGLEKRVLELQKEAEAAKSENMMLRREFLTQREDLEIVMIERDLSTQAAETASKQHLDIIKKLAKLEAECRKLRILAKTSSSLSSNQSVDSHSDGGRERVEGSCSDSWASSAFISELDQIKNEKGGNRSLQGTTSSTEIDLMDDFLEMERLVALPTETQAKNSKDGYELSLMEKLEKIQAEKDDLEREVKCCREAEKRLSLEIEAVVGDKMELEDMLKRVEAEKAELKTSFDVLKDKYQESRVCFQEVDTKLEKLQAEKDELDSEVICCKEAEKRFSLELEAVVGDKIEMEDELEKMEAEKAELKISFDVIKDQYQESRVCFQEVEMKLEAMKRELKLANESKTQAESRVTRMEAEVRKERIVSDGLKEKCETFEEELRREIEEKTMIKREKVEPKIKQEDIATAAGKFADCQKTIASLGKQLQSLATLEEFLIDTASIPGSARSVHNKEALLGKDPHECIKTINGRSLEFLAIQNSNNKTSPPCSSSSDSTTVSLIMSSNRGSSEKNRNGFATVFTRSRNSVNLGI"
misc_feature 576..>1406 /locus_tag="AT1G21810" /gene_synonym="T26F17.2" /note="Filament-like plant protein, long coiled-coil; Region: FPP; pfam05911" /db_xref="CDD:461778" misc_feature 1344..>2129 /locus_tag="AT1G21810" /gene_synonym="T26F17.2" /note="chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168" /db_xref="CDD:274008" ORIGIN
atgctgaagaaaaagttagatatcttctccctctcttcctcttttgaaaattgaaaaaaaaagacatttcaaaactgtaaagaattacaaccacaaaaagaaagaaattctcgcttttttggccatgttatttattcttggttttgaagaatcatatcatattgcaactgttttctagtctggtaatcttgttttctcctcaactcttttttctaatgttctgtaacaaattgttcattacacgaaacgaaacagaaagatgttgttgtagttcttttttaatgacatgttatgaagtgattgctaaaatcattaccagttttgtgttcttctgggaaatgttgtggtccagtccattatatagttaagtacttaagatttgttgtcagagtgtcctgaaagcaaaatctgggaaagctgataagccaagttacctctttttttttatacatatgttttcaaaagttcctaaaaaattgtttggttttgttttatttttctcttcttaaggtacttaagtttgtgatttgatgatgactggtactactttgatattggaaccagttatggattccaaagatgagctagtgaaacaacatgccaaagttgcagaagatgctgttgctgggtgggagaaagctgagaatgaagtggttgagctgaagcaaaagctcgaggatgcggctgataagaacattgtcttggaagatagggtaagtcatcttgatggggcgcttaaggagtgtgtgagacaactaaggcagtttagagatgaacaagagaagaatattcaagcagctgtgactgagagcaccaaggagttgcattctgctaacactggtctagagaagcgagttcttgagctccagaaagaagcagaagctgctaaatctgaaaacatgatgctgagacgcgagtttcttacacagcgtgaagaccttgagattgtgatgattgagagggacttgagcactcaagcagcagaaactgctagtaagcagcatttagacatcataaagaagttggcgaaactcgaagctgagtgcaggaagcttaggattttggctaaaacatcatcatcgctatcatctaatcaatctgtggatagtcattcagatggaggaagggagagagttgaggggagttgctctgattcatgggcatcatcagcatttatttctgagttagatcaaatcaagaatgaaaaaggcggcaatagaagtcttcagggcactacttcatcaactgaaattgatctcatggatgatttccttgagatggaacgtcttgtggctcttcctactgagacacaggctaaaaactccaaggatggatatgaattgagcttaatggagaagttggagaagatacaagcagaaaaggatgatcttgaaagagaagttaaatgttgtagagaagcggaaaagagattgagcttagagattgaagcagttgttggtgacaaaatggagttggaagatatgttaaagagggtggaagctgagaaagctgagctaaagacatcttttgacgtgctcaaagataaatatcaagagtcaagagtttgttttcaagaagttgacacaaagttggagaagctacaagcagaaaaggatgagcttgacagtgaagttatttgttgtaaagaagcagagaagagattcagcttagaactcgaagctgtagttggtgacaaaattgagatggaagatgagttggagaagatggaagctgagaaagctgagctaaagatatcttttgacgtaattaaagatcaatatcaagaatctagagtttgttttcaagaagttgagatgaagttggaagcgatgaaaagggagcttaaactagctaatgaatcgaaaacacaagccgaatctcgggtgaccagaatggaagcagaggtgagaaaggagaggattgtctctgatgggctaaaggaaaagtgtgagacatttgaagaagagcttagaagagagatagaagagaagacaatgatcaagagagaaaaagtggaaccaaagatcaaacaggaagacatagcaacagctgcaggaaaatttgcagattgtcagaaaacaatagcatcacttgggaaacagctacaatctcttgcaacactagaagaattcttgatcgatacagctagcattccaggttctgcaaggtcagttcacaacaaggaagctttgttaggaaaagatcctcatgagtgcatcaaaacaatcaatggaagatcacttgagtttcttgcaatccagaacagcaataacaagacctcacctccttgttcatcttcttcggactcaacaacagtgtcattaattatgtcatcaaaccgagggagttctgagaagaatcgcaacggatttgccacggttttcactcgaagtagaaactcagtaaatttggggatttaggagaagcaataggttcgttcttggagtatagctagaatcaatctgttgttaagctggatttcttaccataattttcagattctgacttgttagtagcaaaaagatcacccttgtttcttttgctacatagtgtaatcttcttaacgtttatgtcttgtgagattcatctttgttatttcactgtcaccagtttgatggtctcatatgatgcattgtcaccaagtaaaatattgatttttgttttgtttggttagataaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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