2024-09-28 09:27:32, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_101594 1140 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana Metal-dependent phosphohydrolase (AT1G17330), mRNA. ACCESSION NM_101594 VERSION NM_101594.3 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 1140) AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S., White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L., Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F., Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R., Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J., Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B., Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J., Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L., Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S., Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X., Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J., Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G., Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H., Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H., Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T., Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G., Fraser,C.M., Venter,J.C. and Davis,R.W. TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 816-820 (2000) PUBMED 11130712 REFERENCE 2 (bases 1 to 1140) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1140) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 1140) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 5 (bases 1 to 1140) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003070). On Sep 12, 2016 this sequence version replaced NM_101594.2. FEATURES Location/Qualifiers source 1..1140 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="1" /ecotype="Columbia" gene 1..1140 /locus_tag="AT1G17330" /db_xref="Araport:AT1G17330" /db_xref="GeneID:838304" /db_xref="TAIR:AT1G17330" CDS 141..809 /locus_tag="AT1G17330" /inference="Similar to RNA sequence, EST:INSD:EH898190.1,INSD:BP668536.1,INSD:BP626663.1, INSD:AV819777.1,INSD:ES097605.1" /inference="similar to RNA sequence, mRNA:INSD:BT009671.1,INSD:BT002376.1" /note="Metal-dependent phosphohydrolase; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase, HD subdomain (InterPro:IPR006674), Metal-dependent phosphohydrolase, HD domain (InterPro:IPR003607); Has 1677 Blast hits to 1677 proteins in 841 species: Archae - 70; Bacteria - 1404; Metazoa - 0; Fungi - 90; Plants - 42; Viruses - 5; Other Eukaryotes - 66 (source: NCBI BLink)." /codon_start=1 /product="Metal-dependent phosphohydrolase" /protein_id="NP_173176.1" /db_xref="Araport:AT1G17330" /db_xref="GeneID:838304" /db_xref="TAIR:AT1G17330" /translation="
MAAKTMRKAEELVEKAMKGNDASHDAWHVWRVRDLALSIAREEGLSSNSDSMEIVELAALLHDIGDYKYIRDPSEEKLVENFLDDEGIEETKKTKILTIINGMGFKDELAGVALCESLPEFGVVQDADRLDAIGAIGIARCFTFGGSRNRVLHDPEIKPRTELTKEQYIKREEQTTINHFHEKLLKLKKLMKTEAGKRRAEKRHKFMEEYLKEFYEEWDGST"
misc_feature 156..797 /locus_tag="AT1G17330" /note="HD superfamily phosphodieaserase, includes HD domain of RNase Y [Translation, ribosomal structure and biogenesis, General function prediction only]; Region: RnaY; COG1418" /db_xref="CDD:441028" ORIGIN
ctctttgactccggtggtcaacgtcgagccgagacggcaaacttgaatcaattttaaaacagagcttccgacgctgaaattgcaaaatcaaaatctctccaatcttcgaaactgagcagttgagagagagagagagatagatggcggcgaagacgatgaggaaggcggaggagctggtggagaaggcgatgaaaggaaacgatgcttctcatgacgcctggcacgtgtggagggtccgagaccttgctctctccattgctcgcgaggaaggtctctcttccaattctgactccatggaaattgtggagcttgcagctcttctccatgatataggtgattacaagtacataagagacccttcggaagagaaacttgttgagaatttcctagatgatgagggtatagaagagaccaagaagacgaagatactaacgatcatcaatggaatgggttttaaagacgaattagcaggagtagcactctgtgagtctcttccagaatttggggtagttcaagatgctgatcgccttgatgcaattggcgccataggaattgctcgttgctttacatttggtggaagcaggaacagagtgcttcatgatcctgagatcaagccccggacagagctaaccaaagagcagtacattaagagagaggagcaaactactattaatcactttcatgagaaactcctcaagctaaagaagctgatgaaaactgaggcgggtaaaaggagggcagagaaaaggcacaagttcatggaagagtatcttaaggagttctatgaagagtgggatgggtcaacttgaaaagttaaaaatgataaatgaagcagaaaagcagaggatttgttcaaccggattttattgagtaagcagtacctaccaaaccaatatgtggtttaggttttaaacagagtggcaactctctctctctttttattttttgtttaaggcaactctatttaaatagctcgtaataactatacatttataaatgttaaaattgctttgtttttaaaaaaagaaaactctattattttgtcaatgccaatgattgtggaagaaatcaagcaaggattacacgatagagccaatcgttttcttttcataatttttttttttacgccaaagtcagttg
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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