2024-09-28 09:27:54, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_100588 1516 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana Pleckstrin homology (PH) domain superfamily protein (SIRANBP), mRNA. ACCESSION NM_100588 VERSION NM_100588.4 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 1516) AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S., White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L., Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F., Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R., Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J., Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B., Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J., Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L., Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S., Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X., Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J., Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G., Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H., Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H., Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T., Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G., Fraser,C.M., Venter,J.C. and Davis,R.W. TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 816-820 (2000) PUBMED 11130712 REFERENCE 2 (bases 1 to 1516) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1516) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 1516) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 5 (bases 1 to 1516) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003070). On Sep 12, 2016 this sequence version replaced NM_100588.3. FEATURES Location/Qualifiers source 1..1516 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="1" /ecotype="Columbia" gene 1..1516 /gene="SIRANBP" /locus_tag="AT1G07140" /gene_synonym="F10K1.15; F10K1_15; RAN-BINDING PROTEIN SIRANBP" /note="Encodes a putative Ran-binding protein (siRanBP)." /db_xref="Araport:AT1G07140" /db_xref="GeneID:837225" /db_xref="TAIR:AT1G07140" CDS 149..835 /gene="SIRANBP" /locus_tag="AT1G07140" /gene_synonym="F10K1.15; F10K1_15; RAN-BINDING PROTEIN SIRANBP" /inference="Similar to RNA sequence, EST:INSD:EL979696.1,INSD:EL023249.1,INSD:EG443702.1, INSD:CF652729.1,INSD:BP801468.1,INSD:BP631288.1, INSD:EL292612.1,INSD:BP565831.1,INSD:EH858180.1, INSD:DR257215.1,INSD:BP630349.1,INSD:EL129082.1, INSD:DR257192.1,INSD:H76544.1,INSD:EL124381.1, INSD:DR257212.1,INSD:EL284894.1,INSD:ES003970.1, INSD:BP602429.1,INSD:BP835369.2,INSD:ES010620.1, INSD:EL272278.1,INSD:DR257206.1,INSD:BP564757.1, INSD:EL167400.1,INSD:AV796561.1,INSD:AV824109.1, INSD:DR257217.1,INSD:DR257218.1,INSD:EG510807.1, INSD:ES074347.1,INSD:EH991029.1,INSD:ES207858.1, INSD:DR257196.1,INSD:BP577643.1,INSD:BP860570.1, INSD:BP799948.2,INSD:EL206280.1,INSD:DR257214.1, INSD:DR257220.1,INSD:EH922033.1,INSD:BP632476.1, INSD:BP619896.1,INSD:EL066481.1,INSD:EG510809.1, INSD:EL337150.1,INSD:EL001671.1,INSD:T88156.1, INSD:AV541936.1,INSD:BP592517.1,INSD:EL130643.1, INSD:ES017535.1,INSD:BP841057.1,INSD:DR257211.1, INSD:CB264740.1,INSD:AV832231.1,INSD:AV543434.1, INSD:EL256330.1,INSD:DR257198.1,INSD:BP613315.1, INSD:DR257208.1,INSD:AV541395.1,INSD:H76880.1, INSD:BP644614.1,INSD:ES052345.1,INSD:AV799724.1, INSD:AV808515.1,INSD:DR257191.1,INSD:DR257213.1, INSD:EL135098.1,INSD:BP580964.1,INSD:BP862266.1, INSD:EH891155.1,INSD:BP641950.1,INSD:ES103598.1, INSD:AV785258.1,INSD:BP600627.1,INSD:BP648725.1, INSD:AV792871.1,INSD:ES131767.1,INSD:BP652813.1, INSD:DR257188.1,INSD:BP806227.1,INSD:EL981398.1, INSD:BP570673.1,INSD:BP577269.1,INSD:BP597364.1, INSD:EH825111.1,INSD:ES044366.1,INSD:DR257216.1, INSD:BP616866.1,INSD:ES004215.1,INSD:BP857461.1, INSD:EH807605.1,INSD:BP576027.1,INSD:EH978216.1, INSD:BP566396.1,INSD:ES070940.1,INSD:ES059085.1, INSD:AV441094.2,INSD:EL112503.1,INSD:BP802049.1, INSD:AV788096.1,INSD:ES066084.1,INSD:EL056880.1, INSD:EH891341.1,INSD:DR257202.1,INSD:EL122424.1, INSD:BP826500.1,INSD:DR257193.1,INSD:BP575068.1, INSD:DR257194.1,INSD:BP804576.1,INSD:DR257219.1, INSD:BP801531.1,INSD:AA389814.1,INSD:EL019522.1, INSD:BP620536.1,INSD:DR257207.1,INSD:BP591854.1, INSD:ES147459.1,INSD:EL014021.1,INSD:AI996939.1, INSD:BP627560.1,INSD:BP657402.1,INSD:AA712288.1, INSD:BP648613.1,INSD:DR257209.1,INSD:AV442638.1, INSD:ES095380.1,INSD:CB264552.1,INSD:DR257221.1, INSD:EH808561.1,INSD:DR257203.1,INSD:ES028261.1, INSD:AV815574.1,INSD:BP668661.1,INSD:DR257190.1, INSD:BP801014.1,INSD:BP819715.1,INSD:BP570440.1, INSD:DR257199.1,INSD:ES056081.1,INSD:EH850630.1, INSD:DR257189.1,INSD:BP664109.1,INSD:BP583898.1, INSD:EH876790.1,INSD:BP854724.1,INSD:DR257210.1, INSD:EL282518.1,INSD:EL031239.1,INSD:DR257197.1, INSD:DR257195.1,INSD:DR257200.1,INSD:BP578089.1, INSD:ES111213.1,INSD:AV440349.1,INSD:BP651545.1, INSD:EL160873.1,INSD:AV786435.1,INSD:BP803873.1, INSD:BP575634.1,INSD:DR257204.1,INSD:BP856954.1, INSD:BP820732.1,INSD:BP825881.1,INSD:EL138410.1, INSD:DR257205.1,INSD:ES214641.1,INSD:EL112126.1, INSD:DR257201.1,INSD:BP850828.1,INSD:BE662763.1" /inference="similar to RNA sequence, mRNA:INSD:BT002193.1,INSD:AF057024.1,INSD:AY097364.1, INSD:AF370491.1,INSD:BX813578.1,INSD:AF410294.1, INSD:X97377.1" /note="SIRANBP; FUNCTIONS IN: Ran GTPase binding; INVOLVED IN: intracellular transport, protein import into nucleus, translocation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Ran binding protein 1 (InterPro:IPR000156), Pleckstrin homology-type (InterPro:IPR011993); BEST Arabidopsis thaliana protein match is: Pleckstrin homology (PH) domain superfamily protein (TAIR:AT2G30060.1); Has 2132 Blast hits to 1580 proteins in 275 species: Archae - 9; Bacteria - 76; Metazoa - 1014; Fungi - 369; Plants - 163; Viruses - 39; Other Eukaryotes - 462 (source: NCBI BLink)." /codon_start=1 /product="Pleckstrin homology (PH) domain superfamily protein" /protein_id="NP_172194.1" /db_xref="Araport:AT1G07140" /db_xref="GeneID:837225" /db_xref="TAIR:AT1G07140" /translation="
MATNEPEHEHRDEEEAGANEDEDTGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKLYRFDKDANQWKERGAGTVKFLKHKNTGKIRLVMRQSKTLKICANHFVKSGMSVQEHVGNEKSCVWHARDFADGELKDELFCIRFASIENCKTFMQKFKEVAESEEEKEESKDAADTAGLLEKLTVEETKTEEKTEAKAVETAKTEVKAEEKKESEAEKSGEAKKTEESGPST"
misc_feature 221..613 /gene="SIRANBP" /locus_tag="AT1G07140" /gene_synonym="F10K1.15; F10K1_15; RAN-BINDING PROTEIN SIRANBP" /note="Ran-binding domain; Region: RanBD_RanBP1; cd13179" /db_xref="CDD:270000" misc_feature order(254..259,263..274,311..313,317..319,323..325, 344..355,404..406,410..412,416..421,425..439,446..454, 476..487,506..508,512..514,524..526,533..535,539..541, 551..553,563..565) /gene="SIRANBP" /locus_tag="AT1G07140" /gene_synonym="F10K1.15; F10K1_15; RAN-BINDING PROTEIN SIRANBP" /note="Ran#RanBP1#RanGAP complex [polypeptide binding]; other site" /db_xref="CDD:270000" misc_feature order(254..259,266..274,299..301,317..319,323..325, 338..355,365..367,398..400,404..406,410..412,416..439, 446..454,476..487,494..502,506..508,512..514,524..526, 545..547,551..553,557..559,563..565) /gene="SIRANBP" /locus_tag="AT1G07140" /gene_synonym="F10K1.15; F10K1_15; RAN-BINDING PROTEIN SIRANBP" /note="CRM1-RanBP1-RanGTP complex [polypeptide binding]; other site" /db_xref="CDD:270000" ORIGIN
atagttagcttcaattcaacgccgtataactatgagtcgttccgatttcctgtgttgcgaaacccccaaattctcttctctctatctctctcgcgtacgccgcaccgtagcgaccaattgaatccacgaggaaatctcagtaaatactatggcgaccaacgaacccgagcacgagcacagagacgaggaagaggccggagctaacgaggatgaggacaccggagctcaggtcgctccgatcgttaggcttgaggaggttgccgtcactaccggcgaggaagacgaagatgccgtccttgatctgaaatcgaagctttatcgattcgataaggatgcgaatcagtggaaggagagaggagctggtactgtgaagttcttaaagcataagaacactgggaagattcgtctcgttatgaggcaatctaaaactttgaagatctgtgctaatcacttcgttaaatcgggcatgagtgttcaggaacacgttgggaatgaaaagtcatgtgtgtggcacgctcgtgactttgctgatggtgaactcaaggatgagcttttctgtatccgatttgcttctattgagaattgcaaaacatttatgcaaaagttcaaggaagttgctgagtctgaagaagagaaagaagagagcaaagatgccgctgacactgctggccttcttgagaaattgactgtggaagagacaaaaacggaggagaaaaccgaagcgaaagctgtggagacggcaaagactgaagtgaaagcagaagaaaagaaagagagcgaggcagagaaatctggtgaagcaaagaaaacagaagaaagtggtccctcaacataagaagcgtcatcatttaagttgccaaatcctggcgaggtaattaagcctcgaaatgttttgatgcatcatgagtctaccattgtcttggcactatctatctatacatgttttgtcgagtcatatcaagtggttgggggatcgcttggggtcgggttttactgaatgctgagtcgttatgggtctaatagtttttgagtctaaagtgtcgggtgatatgagagatttgggtgaaatattttttcatgttggttatctgaaagagtacattggtttcattgttttaagttttctcatggatcctttttggatggtcttattttgaggatacaaatgtgtttgtccatggacaagaatcagaagtctccattttttttttttcaaaatttaatgcatgtgattttttaatcttaaggtaattgccaattgtttgacaaaaaaaaggtaattgccaatctactttgctctcttgtgttagtcgatgctagtcttgaccctgataaagatccaaaatgtatattaacagtattcataaaattcttcagttataacgaactgttcacggaaaaaaaatgacattgtactatactgtgctaaaattaccaaagcatgatttatataaatcatatccagtaagaccatatgtgaatgaataacaatggattatgcttaggttaagatttt
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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