2024-09-28 11:21:08, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001332952 3918 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana ARGONAUTE 3 (AGO3), mRNA. ACCESSION NM_001332952 VERSION NM_001332952.1 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 3918) AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S., White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L., Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F., Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R., Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J., Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B., Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J., Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L., Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S., Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X., Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J., Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G., Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H., Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H., Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T., Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G., Fraser,C.M., Venter,J.C. and Davis,R.W. TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 816-820 (2000) PUBMED 11130712 REFERENCE 2 (bases 1 to 3918) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3918) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 3918) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 5 (bases 1 to 3918) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003070). FEATURES Location/Qualifiers source 1..3918 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="1" /ecotype="Columbia" gene 1..3918 /gene="AGO3" /locus_tag="AT1G31290" /gene_synonym="ARGONAUTE 3; T19E23.8; T19E23_8" /db_xref="Araport:AT1G31290" /db_xref="GeneID:840017" /db_xref="TAIR:AT1G31290" CDS 174..3650 /gene="AGO3" /locus_tag="AT1G31290" /gene_synonym="ARGONAUTE 3; T19E23.8; T19E23_8" /codon_start=1 /product="ARGONAUTE 3" /protein_id="NP_001322307.1" /db_xref="Araport:AT1G31290" /db_xref="GeneID:840017" /db_xref="TAIR:AT1G31290" /translation="
MDRGGYRGGRGDGRGRGGGGDRGRGYSGRGDGRGRGGGGDRGRGYSGRGDGHGRGGGGDRGRGYSGRGRGFVQDRDGGWVNPGQSSGGHVRGRGTQLQQPPPQEVPPSSSQAQVSQGVAPGDVGQGGVGDVGRDGVGDVGRDGVGDVGQGGVGDVGQVGVGDVGQGGVGDVGQGGVGDVGRDGVGDVGRDGVGDVGRGGVGDRGQSQSGLSSGHFGRGTQLQQPQPQAVSQSSSQGQVSQSFATGGVGLGAWARKPQLFSDSTVLPSSSSSNVVASHTASGSQVMTPKPSSSDKKEPVKRPDKGGNIKVKGVINLSVNHFRVSFSTESVIRHYDVDIKGENSSKKISRFELAMVKEKLFKDNNDFPNAMTAYDGQKNIFSAVELPTGSFKVDFSETEEIMRGRSYTFIIKQVKELKLLDLQAYIDGRSTFIPRDVLQGMDVVMKEHPSKRMITVGKRFFSTRLEIDFGYGVGAAKGFHHTLKPTVQGLSLCLNSSLLAFRKAISVIEYLKLYFGWRNIRQFKNCRPDDVVQELIGLKVTVDHRKTKQKFIIMGLSKDDTKDIKFDFIDHAGNQPPRKISIVEYFKEKYGRDIDHKDIPCLNLGKKGRENFVPMEFCNLVEGQIFPKEKLYRDSAAWLKELSLVTPQQRLENINKMIKSSDGPRGGDIIGNFGLRVDPNMTTVEGRVLEAPTLKLTDRRGNPIHEKLMSESNQWNLTTKGVTKGSIIKHWAVLDFTASESLKKKMPGYFVNKLIERCKGLGMQMEAPIVCKTSSMETLYDGNALEELLRSVIDEASHNHGGACPTLVLCAMTGKHDGYKTLKWIAETKLGLVTQCFLTISAIKGETVSDQYLANLALKINAKVGGTNVELVDNIFSFFKKEDKVMFIGADVNHPAAHDNMSPSIVAVVGTLNWPEANRYAARVKAQSHRKEEIQGFGETCWELIEAHSQAPEKRPNKIVIFRDGVSDGQFDMVLNVELQNVKDVFAKVGYNPQITVIVAQKRHQTRFFPATTSKDGRAKGNVPSGTVVDTTIIHPFEYDFYLCSQHGAIGTSKPTHYYVLSDEIGFNSNQIQKLIFDLCFTFTRCTKPVALVPPVSYADKAASRGRVYYEASLMKKNSKQSRGASSSSASVASSSSSVTMEDKEIFKVHAGIENFMFFV"
misc_feature 1290..1502 /gene="AGO3" /locus_tag="AT1G31290" /gene_synonym="ARGONAUTE 3; T19E23.8; T19E23_8" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 1689..2060 /gene="AGO3" /locus_tag="AT1G31290" /gene_synonym="ARGONAUTE 3; T19E23.8; T19E23_8" /note="PAZ domain; Region: PAZ; pfam02170" /db_xref="CDD:460472" misc_feature 2172..3497 /gene="AGO3" /locus_tag="AT1G31290" /gene_synonym="ARGONAUTE 3; T19E23.8; T19E23_8" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2622..2624,2634..2636,2670..2681,2688..2690, 2721..2723,2730..2732,2742..2744,2754..2756) /gene="AGO3" /locus_tag="AT1G31290" /gene_synonym="ARGONAUTE 3; T19E23.8; T19E23_8" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2838..2840,2844..2846,3057..3059,3465..3467) /gene="AGO3" /locus_tag="AT1G31290" /gene_synonym="ARGONAUTE 3; T19E23.8; T19E23_8" /note="active site" /db_xref="CDD:240015" ORIGIN
tttacaaactctacgacttaagcttctctgttcctacaccttttgttcttctatttaaagccctctgatttgttacttcacattcacaagttttgaaagcaaacacataaagaaaattctagttcaatcttttgtcactcaagagtcttcccgaccgtatccagtcaaataccatggatcgaggtggttaccgaggaggtcgtggtgatggccgtggcagaggcggcggcggagatcgtggtcgtggttacagcggtcgtggtgatggccgtggcagaggcggcggcggagatcgtggtcgtggttacagcggtcgtggtgatggccatggcagaggcggcggcggagatcgtggtcgtggttacagcggtcgtggtcgtggctttgttcaagatagggatggtggttgggtaaatccagggcaaagttcaggtggtcatgttcgtggtcgtgggacgcagttgcaacaacctccgccacaggaagttcctccgtcgtcgtcgcaagctcaagtgagtcaaggcgttgcaccaggagacgtgggtcaaggcggcgtcggagacgtgggtagagacggcgtcggagacgtgggtagagacggcgtcggagacgtgggtcaaggtggcgtcggagacgtgggtcaagtaggcgtcggagacgtgggtcaaggcggcgtcggagacgtgggtcaaggcggcgtcggagacgtgggtagagacggcgtcggagacgtgggtagagacggcgtcggagacgtgggtagaggcggcgtcggagaccgtggacagagtcagtcgggactatcgtcgggtcactttggtcgtgggacgcagttgcaacaacctcagccacaggcggtttctcagtcgtcttcgcagggtcaagtgagtcaatcctttgcaacaggaggcgtgggtttaggcgcgtgggctcgtaagcctcaacttttctctgattcgacggtcttaccttctagttcttcgtctaacgtcgttgcttctcacaccgctagtggttctcaagttatgactccgaaaccatcttcttctgataagaaagaaccagtaaagcgtcctgataaaggtggtaatataaaagtgaaaggcgtaattaatctctccgtcaatcattttagagtgagtttctcaacagaaagtgtcataaggcactacgatgttgatatcaaaggagaaaattcttcaaaaaagatatcaagatttgagctagctatggtcaaagaaaagctgttcaaggacaataatgactttcctaacgccatgacagcgtacgatggtcagaagaacattttcagcgctgttgaattacctacgggatcatttaaagttgatttctcagaaaccgaggagatcatgagaggtagaagctatacgttcatcatcaaacaagtgaaagagctaaagttacttgacttgcaagcctacatagatggacgttccacttttattccgcgtgatgtgttgcaaggaatggatgttgtgatgaaggaacatccttcaaaacgtatgatcactgttggtaaaagattctttagtactcggctagagattgactttggatacggagttggagctgcgaaagggtttcaccacactctcaagcccacagtacaaggtttatcattatgtttgaactcctctttgttggcgttccgcaaagcaatttcagtcatcgaatacctgaagttgtactttgggtggagaaatatacgtcagtttaagaattgtaggcctgatgacgtggtacaagaattgattggtttgaaagtcactgttgatcatcgaaagaccaaacagaaattcatcattatggggttgagtaaggacgacacaaaagatatcaaattcgattttattgatcatgctggaaaccagcctccaaggaaaatatccattgttgagtatttcaaggaaaagtatggaagagacattgatcacaaggatattccttgcttgaatttggggaaaaagggtcgggaaaattttgtacccatggagttctgtaacttagtcgaggggcagatttttccaaaagagaaattgtatagagattcagccgcgtggttaaaggagctttcactagtcactccacaacaaagactggagaatataaataagatgataaagtctagtgatggacctagaggtggagatatcattggaaacttcggattgagagtggatccaaacatgacaacggtggaaggtcgtgtactcgaggctcctacactgaaattgactgatcggagaggcaatcctatccatgagaaactcatgagcgagagcaatcaatggaaccttacgacaaagggagtcacaaagggttcaataatcaagcattgggctgttcttgacttcactgcatccgagagtttgaaaaaaaagatgcctggttactttgtaaataaactcatcgaacgttgtaagggacttgggatgcagatggaggctcctatcgtttgcaaaacatcgagtatggaaacactttatgatggtaatgctcttgaggaattgcttcgatccgtgatagatgaggcttctcataaccatggtggggcttgtccaactcttgttctgtgtgctatgactgggaagcacgatggatacaagactctgaaatggatagccgagaccaaacttggtctagtgactcagtgtttcttgaccatatctgccattaaaggagaaaccgtttctgatcagtacttggcaaatctcgccctcaagataaacgcaaaggttggtggaacgaacgtggagttggtggataatattttctctttcttcaaaaaagaagataaggtcatgttcattggtgctgatgtcaatcatcccgctgctcacgacaatatgagtccatccattgttgctgttgtaggcactcttaactggcctgaagctaaccgctacgcagctagagtcaaagctcagagtcaccgtaaagaagagatacaagggtttggtgaaacttgctgggagcttatcgaagctcattctcaggcccccgagaaacgacctaacaagattgtgatattccgtgatggtgtcagcgatggtcagttcgatatggttctcaatgtggagttacagaatgttaaggacgtttttgccaaggttggctataatccgcagataactgtaattgtggcacagaaacgtcatcaaacccgtttcttccccgccacaactagcaaagatggaagggctaagggcaatgtgccttcaggtacggtcgttgataccacgatcattcacccgtttgagtatgatttctacctctgtagtcaacatggagcgataggtacaagcaaaccaactcattattatgttctttcggacgaaatcgggttcaactcgaatcagattcagaaactcatctttgacttgtgcttcacgtttactcgctgcaccaaaccggtcgctctggttcctccggtttcttatgctgacaaggctgcttctagaggaagggtgtactacgaggcaagcttaatgaagaagaattctaagcagtcgcgtggagcgtcttcgtcttctgcctcggttgcctcttcatcctcttctgtcacaatggaggacaaagagatcttcaaggttcacgcaggcatcgagaactttatgttctttgtctgaaaaaaagtttgatcttaaaatatttatctaaataagaacgtctcattaacgcagttcttactcctttttctgattagaaaggatgtttgtgcgtgaatctaatcgttagatatgcagtttgtttgtttccttttcgttgttggtgtgttgaaaatagtttgtatttggtattgtaatgctctttagagctgaaactatgtcatgttatggtattttattatagttttcagactttggattcaataaatagttcatattttgctacttc
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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