2024-09-28 09:30:55, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001203340 2250 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana nuclear matrix protein-like protein (THO1), mRNA. ACCESSION NM_001203340 VERSION NM_001203340.2 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 2250) AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E., Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K., Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S., Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M., Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R., Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J., Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J., Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L., Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B., Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E., Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A., Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M., See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L., Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R., Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R., Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N., Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B., Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H., Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W., Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M., Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S., Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K., Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C., Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P. CONSRTM Kazusa DNA Research Institute; Cold Spring Harbor and Washington University in St Louis Sequencing Consortium; European Union Arabidopsis Genome Sequencing Consortium TITLE Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 823-826 (2000) PUBMED 11130714 REFERENCE 2 (bases 1 to 2250) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2250) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 2250) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003076). On Sep 12, 2016 this sequence version replaced NM_001203340.1. FEATURES Location/Qualifiers source 1..2250 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="5" /ecotype="Columbia" gene 1..2250 /gene="THO1" /locus_tag="AT5G09860" /gene_synonym="AtHPR1; AtTHO1; HPR1; MYH9.7; MYH9_7" /note="Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors. Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis." /db_xref="Araport:AT5G09860" /db_xref="GeneID:830846" /db_xref="TAIR:AT5G09860" CDS 254..2050 /gene="THO1" /locus_tag="AT5G09860" /gene_synonym="AtHPR1; AtTHO1; HPR1; MYH9.7; MYH9_7" /note="THO1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: production of ta-siRNAs involved in RNA interference, gene silencing by RNA; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: THO complex, subunit THOC1 (InterPro:IPR021861)." /codon_start=1 /product="nuclear matrix protein-like protein" /protein_id="NP_001190269.1" /db_xref="GeneID:830846" /db_xref="TAIR:AT5G09860" /db_xref="Araport:AT5G09860" /translation="
MDAFRDAILQRAPIETFALKTVQHFIQPQKQTKLAQDENQMLENMLRTLLQELVAAAAQSGEQIMQYGQLIDDDDDDDDIHGQIPHLLDVVLYLCEKEHVEGGMIFQLLEDLTEMSTMKNCKDVFGYIESKQDILGKQELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDPPKGISVDFNFYKTFWSLQEYFCNPASLTSASTKWQKFSSSLAVVLNTFDAQPLSEEEGEANSLEEEAATFNIKYLTSSKLMGLELKDSSFRRHILLQCLIMFDYLRAPGKNDKDLPSETMEELKSCEDRVKKLLEITPPKGKEFLRAVEHILEREKNWVWWKRDGCPPFEKQPIDKKSPNAGQKKRRQRWRLGNKELSQLWRWADQNPNALTDSQRVRTPDIADYWKPLAEDMDPSAGIEDEYHHKNNRVYCWKGLRFTARQDLEGFSRFTEMGIEGVVPVELLPPEVRSKYQAKPNEKAKRAKKEETKGGSHETEGNQIGVSNSEAEAEGGRGDAETMESDAIADTPTPEEQQRLGGSDTENGQEAGQIEDGETEEAGLMDTDLDHPPMPVS"
misc_feature 512..1789 /gene="THO1" /locus_tag="AT5G09860" /gene_synonym="AtHPR1; AtTHO1; HPR1; MYH9.7; MYH9_7" /note="THO complex subunit 1 transcription elongation factor; Region: efThoc1; pfam11957" /db_xref="CDD:463412" ORIGIN
aagcccggatatttgcggataatttgattgttgggaggatatcttccggatccggatccaccctaaattaaaattgttcttcctccactcttcttcaagtttggcctccgtttccagatttttattcaattcttcttaatcaacttttaaaatccggcgactcatagtccgtgaattttgaccggcatatccggttttggtgtcgtcggtaaattcctcttcattgcagtggaagctggttcattgagaaataatggatgcatttagagatgctatattgcagcgagctccaattgaaacctttgcactcaagactgttcaacactttatacaacctcagaaacaaacaaagttggctcaagatgaaaaccaaatgcttgaaaacatgctccggacattgctgcaggagctagtggctgctgctgcgcaatcaggggagcaaattatgcagtatggtcagttgattgacgatgatgatgatgatgatgatatacatggacagattcctcatcttctagatgttgtgctttatctttgtgagaaagagcatgtagaaggtggcatgatattccagctgctggaggatttgaccgaaatgtctactatgaaaaactgtaaagatgttttcggttatattgaaagcaaacaagatatattgggcaagcaagagctttttgcacgcggaaaacttgtcatgttgaggacttgcaaccaacttctccgccgactctcaaaggccaatgatgttgtattctgtggaaggattcttatgtttttggctcacttttttccgttatctgagcgctcagccgtcaatataaaaggtgtttttaatacatctaatgaaaccaaatatgaaaaagatcctccaaaaggcatttctgtagatttcaacttctacaagacattttggagtttacaggagtatttctgtaatcccgcttctcttacttccgcatctaccaagtggcagaaattttcatccagtttggcggttgttttaaacacctttgatgctcaaccactaagcgaagaagagggagaggctaatagtttggaggaagaggcagcaacttttaatataaagtacctaacaagtagtaaattgatgggtttagagttaaaggattcgagtttccgacgacatattcttctccagtgcctcattatgtttgattatctaagggcaccagggaagaacgacaaagatctgccatctgaaaccatggaagaacttaagtcatgtgaggatcgtgtaaagaaattgcttgagatcactccgcctaaagggaaagaattcctccgtgcagttgagcatatactggagcgcgaaaagaattgggtctggtggaaacgtgatggatgtccaccatttgaaaagcaaccgatagataagaaatcacctaatgcagggcaaaagaaacggagacaaagatggagattgggaaataaagaactctcccaactttggagatgggcagatcaaaatccgaatgctttgactgattctcaacgcgtgcgaacccctgatattgcagactactggaaaccattagcagaagatatggatccatcagctggcatagaagatgagtaccatcataaaaacaacagagtttactgctggaaaggtcttcggtttacagctcggcaagaccttgaaggattttctaggtttactgaaatgggaatcgaaggagttgtcccagttgaactattgccgcctgaggtccggtccaaataccaagctaaaccaaacgaaaaagccaaacgagcgaagaaagaagaaaccaaaggtggatctcatgaaacagagggaaaccagattggtgtttctaatagtgaagctgaagctgaaggaggaaggggtgatgcagagacgatggagagtgatgctattgcagacactcctacgcctgaggaacagcaaagactcggtggttctgatacagaaaacggtcaagaggccggtcaaatcgaagacggagagacagaagaagctggtctgatggacactgatcttgatcatcctcctatgcccgtctcatgaatacgctttcagtttgtcgaccctttcttcaatggggaatcctttggatatgaagttcaaaagtattgatgtttaacaaattatgttaaaaggtattttctaaatatgtttgtatgagtgcaaatctgctagcttattacctgtctttccatttctatatactcaacaaaatcatcatacaattaagttcttttgcgtaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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