2024-09-28 09:25:26, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001202572 1343 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana yacP-like NYN domain protein (AT2G02410), mRNA. ACCESSION NM_001202572 VERSION NM_001202572.1 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 1343) AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D., Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V., Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L., Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L., Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H., Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D., Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and Venter,J.C. TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana JOURNAL Nature 402 (6763), 761-768 (1999) PUBMED 10617197 REFERENCE 2 (bases 1 to 1343) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1343) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 1343) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003071). FEATURES Location/Qualifiers source 1..1343 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="2" /ecotype="Columbia" gene 1..1343 /locus_tag="AT2G02410" /gene_synonym="AT2G02420; T16F16.20; T16F16_20" /db_xref="Araport:AT2G02410" /db_xref="GeneID:814772" /db_xref="TAIR:AT2G02410" CDS 306..1037 /locus_tag="AT2G02410" /gene_synonym="AT2G02420; T16F16.20; T16F16_20" /note="unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF901 (InterPro:IPR010298)." /codon_start=1 /product="yacP-like NYN domain protein" /protein_id="NP_001189501.1" /db_xref="Araport:AT2G02410" /db_xref="GeneID:814772" /db_xref="TAIR:AT2G02410" /translation="
MLSITCSFSSYGRHFQSRGSGMAKPATSYRKKKVEKDELPDDSELYRDPTNTLYYTNQGLLDDAVPVLLVDGYNVCGYWMKLKKHFMKGRLDVARQKLVDELVSFSMVKEVKVVVVFDALMSGLPTHKEDFAGVDVIFSGETCADAWIEKEVVALREDGCPKVWVVTSDVCQQQAAHGAGAYIWSSKALVSEIKSMHKEVEKMMQETRSTSFQGRLLKHNLDSEVVDALKDLRDKLSENETKR"
misc_feature 504..929 /locus_tag="AT2G02410" /gene_synonym="AT2G02420; T16F16.20; T16F16_20" /note="PIN_domain of Bacillus subtilis YacP/Rae1 and related proteins; Region: PIN_YacP-like; cd10912" /db_xref="CDD:350236" misc_feature order(546..548,582..584,591..596,603..605,612..617, 624..629,702..704,894..896,903..908,912..920,924..929) /locus_tag="AT2G02410" /gene_synonym="AT2G02420; T16F16.20; T16F16_20" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:350236" ORIGIN
gttgacatgatattatccactagttttatagacttttcaaaaaaaggagagaattttcaattcttcagtagtcaaatagatgaagaccgccggagcgccgccgcagagaggtggttcctcttcctcctccgccgtatactttaactggtcttcatcatcttgttcttacgatagctgtagagttttggtggtgaagatgggaggaaaaagcaagaagcctcatcaatcttcttcttttaaggtccacacatagatgcacatttatgtaaaggagtcagagccagaaccaccgagaatcaaatccaatgttaagcataacttgcagcttctcaagttatggaaggcattttcagagcagaggatctggcatggctaagccagcgactagttacaggaagaagaaagtagagaaagacgagttaccggatgatagcgagctctaccgggatcctacaaatacgctttactacacgaaccaaggtctattggatgacgcagttccggttttgcttgttgatggttataatgtgtgtggatattggatgaagttaaagaaacatttcatgaaaggaaggcttgacgttgctcggcagaagttagttgatgaacttgtgtccttcagtatggttaaagaggttaaggtagtggttgtgtttgatgctctcatgtctggtcttcctactcacaaggaagactttgcaggtgttgatgtgattttctcaggagaaacttgtgctgacgcttggattgaaaaggaggtggttgcattgagagaagatggatgccccaaggtttgggttgtaacatctgatgtctgtcaacaacaagcagcacatggagcgggagcttatatttggagtagcaaggcattggtttctgagattaaatcgatgcataaggaggttgagaaaatgatgcaagaaacaaggtcaacatctttccaagggagattgcttaaacacaatcttgattctgaagtcgttgatgctcttaaagatcttagagacaaattatcagaaaacgaaacaaagagatgacaaaaagaccaatccggattatataaacaattaacaaggcttggtctctccatgtaacttctgtcccaagtaagtaagctaatctgacttgtaaaaaacagaggctgcagaggaaacgagggagatagagagagagagagctcaaatgctttgttattgttgtatttgtgtctgaattctttttgactaatctatatatagattcgttttctttggtccaaacatatggttaaaagatagttctgaatttttcttttagcttcatgcataagaatcatcttaacctaataacctatgtttattatt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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