2024-09-28 09:26:18, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001084888 1615 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana ORTHRUS-like protein (ORTHL), mRNA. ACCESSION NM_001084888 VERSION NM_001084888.1 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 1615) AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G., Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N., Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M., Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R., Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M., Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M., Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W., Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L., Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J., Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I., Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U., Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M., Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C., Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J., Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S., Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A., Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D., Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S., Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O., Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S., Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F., Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T., Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A., Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D., Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P., Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W., Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M., Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E., Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M., Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G., Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A., Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N., Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M., Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S., Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K., Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C., Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D., Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A., Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N., Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M., Martienssen,R. and McCombie,W.R. TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana JOURNAL Nature 402 (6763), 769-777 (1999) PUBMED 10617198 REFERENCE 2 (bases 1 to 1615) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1615) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 1615) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003075). FEATURES Location/Qualifiers source 1..1615 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="4" /ecotype="Columbia" gene 1..1615 /gene="ORTHL" /locus_tag="AT4G08590" /gene_synonym="15935; ORL1; ORTH-LIKE 1; ORTHRUS-like; ORTHRUS-LIKE 1; T3F12.10; VARIANT IN METHYLATION 6; VIM6" /db_xref="Araport:AT4G08590" /db_xref="GeneID:826420" /db_xref="TAIR:AT4G08590" CDS 36..1430 /gene="ORTHL" /locus_tag="AT4G08590" /gene_synonym="15935; ORL1; ORTH-LIKE 1; ORTHRUS-like; ORTHRUS-LIKE 1; T3F12.10; VARIANT IN METHYLATION 6; VIM6" /inference="Similar to RNA sequence, EST:INSD:ES175588.1,INSD:F14281.1,INSD:ES105076.1, INSD:ES161112.1" /inference="Similar to RNA sequence, mRNA:INSD:BT022101.1" /note="ORTHRUS-like (ORTHL); CONTAINS InterPro DOMAIN/s: SRA-YDG (InterPro:IPR003105), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G57820.1); Has 2781 Blast hits to 2709 proteins in 231 species: Archae - 0; Bacteria - 14; Metazoa - 1735; Fungi - 182; Plants - 616; Viruses - 10; Other Eukaryotes - 224 (source: NCBI BLink)." /codon_start=1 /product="ORTHRUS-like protein" /protein_id="NP_001078357.1" /db_xref="GeneID:826420" /db_xref="TAIR:AT4G08590" /db_xref="Araport:AT4G08590" /translation="
MTRVNQLPCDCVSTAEESLTSGTCITPTHVTSLSSPLDRSGDVDPLPVSDESGGSKADESMTDADETKKRKRILSGDCEADENNKSDGEIASLNDGVDAFTAICEDLNCSLCNQLPDRPVTILCGHNFCLKCFDKWIDQGNQICATCRSTIPDKMAANPRVNSSLVSVIRYVKVAKTAGVGTANFFPFTSNQDGPENAFRTKRAKIGEENAARIYVTVPFDHFGPIPAEHDPVRNQGVLVGESWENRVECRQWGVHLPHVSCIAGQEDYGAQSVVISGGYKDDEDHGEWFLYTGRRGRHFANEDQEFEDLNEALRVSCEMGYPVRVVRSYKDRYSAYAPKEGVRYDGVYRIEKCWRKARFPDSFKVCRYLFVRCDNEPAPWNSDESGDRPRPLPNIPELETASDLFERKESPSWDFDEAEGRWRWMKPPPANHEQRERMKMAMTCLLLFVLIILVGSSSILYQY"
misc_feature 348..491 /gene="ORTHL" /locus_tag="AT4G08590" /gene_synonym="15935; ORL1; ORTH-LIKE 1; ORTHRUS-like; ORTHRUS-LIKE 1; T3F12.10; VARIANT IN METHYLATION 6; VIM6" /note="first RING finger, HC subclass, found in Arabidopsis thaliana ORTHRUS and similar proteins; Region: RING-HC_ORTHRUS_rpt1; cd23138" /db_xref="CDD:438500" misc_feature 717..1166 /gene="ORTHL" /locus_tag="AT4G08590" /gene_synonym="15935; ORL1; ORTH-LIKE 1; ORTHRUS-like; ORTHRUS-LIKE 1; T3F12.10; VARIANT IN METHYLATION 6; VIM6" /note="SET and RING finger associated domain; Region: SRA; smart00466" /db_xref="CDD:197742" ORIGIN
ttcctctctccgatctttgccgttgctctttcgaaatgacgcgtgtcaaccagcttccatgcgactgtgtatctacggcggaggaatctctcacttccggcacgtgcattacccctacgcacgtgacttccctttcgtctcctcttgatcgctccggcgatgttgatcctcttcctgtttccgacgaatctggtggctcgaaggccgatgaatctatgactgacgcagatgagactaaaaagaggaaacggatactcagtggtgattgtgaagccgatgagaataataagagtgacggagaaatcgcgagtctcaatgacggtgttgatgcgtttactgcgatttgtgaagacttgaattgttctctgtgtaatcaattgcctgataggcccgtcacgatattatgtggacataacttttgcttgaaatgttttgacaagtggattgatcaagggaatcaaatttgtgctacatgtcgtagcacaattcctgacaaaatggctgccaatcctcgtgttaactcgtctcttgtgtctgttatccgttatgtaaaagttgctaaaactgctggtgttggtactgcaaatttttttccttttacaagcaaccaagacggcccagagaatgcctttagaaccaagcgcgctaaaatcggggaggagaatgctgcaaggatatatgttaccgtaccatttgatcactttggtcctataccagctgaacatgatcctgtcaggaaccaaggtgttttagttggagaatcctgggagaatcgagtagagtgtcggcagtggggggttcacttgccacatgtttcttgcattgctggacaagaagactatggagctcagtctgtagtaatatctggaggttataaggatgacgaggatcatggagaatggtttctatacacaggaaggagagggagacatttcgctaacgaggatcaggagtttgaagacttgaatgaagctttaagagttagttgcgaaatggggtatccagttcgagttgtcaggtcttacaaggataggtattctgcatatgcccctaaggaaggagtgagatatgatggtgtatacaggatcgagaaatgctggcgaaaagctagattcccggattcatttaaggtctgtcgttacctgtttgtaagatgtgacaatgagccagctccatggaacagtgatgagagtggagatcgtccaagacctttgcctaatattccagagcttgaaacggcctcagacctgtttgagagaaaggaaagtccatcatgggattttgatgaagccgagggccgttggagatggatgaagcctccacctgcaaatcatgagcagagggagagaatgaagatggctatgacatgtcttctcctttttgtccttatcattctcgttggttcatcatctatcttatatcagtattagaagaatcaccgacaaataacttgttggtttgatcccttagttgtctttcttgttaccaacagtcttttctagttctctcactactcaagtcttggaaacttgaggttctcttggttagtgaagtcggattcatatttttttgtatgcttccaacaatttgtccctgctctcaaaaggtgcaatga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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