2025-08-29 17:18:30, GGRNA.v2 : RefSeq release 231 (Jul, 2025)
LOCUS XR_011706538 5934 bp RNA linear ROD 01-MAR-2025 DEFINITION PREDICTED: Marmota flaviventris NRDE-2, necessary for RNA interference, domain containing (Nrde2), transcript variant X3, misc_RNA. ACCESSION XR_011706538 VERSION XR_011706538.1 DBLINK BioProject: PRJNA1228026 KEYWORDS RefSeq. SOURCE Marmota flaviventris (yellow-bellied marmot) ORGANISM Marmota flaviventris Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Marmota. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_092499) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_047511675.1-RS_2025_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/25/2025 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5934 /organism="Marmota flaviventris" /mol_type="transcribed RNA" /isolate="mMarFla1" /db_xref="taxon:93162" /chromosome="2" /sex="male" /tissue_type="brown fat" /dev_stage="adult" /geo_loc_name="USA: Gunnison County, Colorado" /lat_lon="38.718100 N 107.199200 W" /collection_date="2017-07-11" /collected_by="Gregory Florant" gene 1..5934 /gene="Nrde2" /note="NRDE-2, necessary for RNA interference, domain containing; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:114089629" misc_RNA 1..5934 /gene="Nrde2" /product="NRDE-2, necessary for RNA interference, domain containing, transcript variant X3" /db_xref="GeneID:114089629" ORIGIN
gcaggggccatttccgtagagaggaacggcggagcggcctgtgtccatggcgctgttcccagcctttgcgggcgttagtgaggcccccgatggtgggggttccaggaaagaattagactggctgagtaacccaagtttttgtgtcggaactgtaactaccctgagccaacaaactgaagaggccacagctcttgtttctgaagggtcatcaccaacaaggagtcctctgaaatcagagccttcagatgaaagtgatgctagcagaaagctcacacaaataatcaggagaaagaagaaggaacaaaagaaaaaaaggaagcatcagcaccacaagaaaaccaagaggaagcaccggcagtcgagcagcagcgagtctgagccagattctgattcaggaaaggacagatcttccaggagcatcagaagcagccagaagcaagctgagcaacccaatcaaggaaataatactgctgctgatgctggacttcgctctgtctggcttgaggacattcagtctctgacaggagaaaccttcagaacagataagaaacccgatcctgcaaactgggagtataagtctctctaccgaggggatattgcaagatacaagaggaaaggagactcctgcctgggcattaacccgaagaagcagtgcatatcttgggaaggggcttcctcaacaaagaagcgtgcgcacaggcacgttgaacgctattttacgaagaagagcgtggggttgatgagcgttgatggcgtttctgttagcagtagaactgatcctccctctgcagagccggtcttgtttatccccgtgaaggacttggatgatatggcttctcctgttacaacctggttgaatcctttggggatttatgatcgttcaaccacacagtggttacaaggacagggtccttcagaagcagaatcaaagcagccagagtcacagctggacagagagaatgctcttctcaaggcaaaggtggaggagtttaataggaaggttcgggagaaccctcgggatattcagctgtggatggcatttgttgcttttcaggatgaggtcatgaggagtcctggcctgtatgctatggaggaaggagaacaggagaagagaaagaagtccctgaagctcatcctggagaagaagctggccatcttggagcgggccattgagagcaaccagagcagcatcgatctcaagctcgccaagctgaagctctgtgcggagttctgggagcctgctgcgctggtcaaagagtggcagaaactggtctttttacatcccaataacacggtcctttggcagaaataccttttgttttgccagagccagtttagcactttttcaatatcaaaaattcacagtctttatggaaagtgcttgagcactctgtctgctgttaaggatggcagcatcttatctcaccctgctctgcctggcatagaagaggccatgtttgcactccttcttcagcagtgccactttctgcggcaggctggccactcagagaaggccgtgtctttgttccaggccatggttgacttcactttcttcaaacctgacagtgtgaaagatctgcctaccaaattacaggtggaattctttgagcccttctgggacagtggagagccacggcctggggagaaaggagcgagaggctggcgagcgtggatgcaccagcaggagcggggtggctgggtggtcatcaatccagatgaggatgatgacgagccagaagaggatgaccaggagataaaagagaagactctgcccaggtggcagatctggcttgctgctgagcgttcccgagatcaaaggcactggcggccctggcgccctgataagaccaagaaacaaactgaggaagactgtgaggatcccgagagacaggtgttgtttgatgatattggacaatctctgatcaggctttccagccaagagcttcagttccagttgatcgaggcctttctgcagttcttgggtgtgccttctggctttgtccctccagcctcctgcctgtacctggccatggatgagagcagcatctttgatagtggactctgtgatgaaaagcccttgacttttttcaacctttcattttctggcattagctgtgttggctgcatggaccggttgggctctctccgctggaccaggggtcacaatcgagagggcgaggagttcattcgcaatgtcttccaccttgtgatgcctttgttttcgggcaagcaaaagtctcagctctgcttctcctggttacggtacgagattgcaaaggtcatttggtgtctgcacactaaaaacaagaagagattaaagtcacaggggaagaactgcaaaaaattagccaagaatctccttaaagagccagaaaaccgtaataatttttgcctctggaagcagtacgcacatctggagtggttgcttggcaacatagaggatgcccgaaaagtttttgatacagccctcagtatggtgggcagcagcgagctgaaggaccgtgaactttgtgaactcagtctcctctatgctgagctggaggtggagctgtcactggacttgtcaggggccaccacggcccgagctgttcacatactaacccgactgacagagagcagtccctacgggcccttcactgggcaggtcttacccactaatgttttgaaagctcgaaaggcttacgagcatgcgctacaagactgtttgggtaagagctgtgtctctgatccaactcctgctgactccttgaactgcctgagtagcttggtcaaatgctttatgctgttccagtatttgaccgtagggattgatgctgccgtgcagatatatgaacagctatttgccaaactgaagggttctgttttctcagaaggctctggcatggaggacggtgccagctcccagaatctgaccagtgttcttgaagccatcacgctgatgcacacaagtctgctgaggttccacatgaaagttaatgtttaccctttgactccgctacgagaggcgctctcggaggctttgaggctgtatcccggcaaccaggttctttggaggtcatatgttcagattcagaataagtctcacagtgctagcaagaccagaaaattctttgatgcaatgaccaggtctgccaaacccatggagccgtggttatttgcaattgaagctgagaaaatgaggaaaagactggtagaaactgttcagagggtgggaggtagagagatccacgccaccatcccagagaccggcttaacacatcggatcagagccctgtttgagaacgcagtgcggagtgaccacggcagccagtgccccttactgtggaggatgtatttgaattttttgggagaggagaactgtggtgccccgctcacggctgacacgggagctgctccagggaggctggcctccatgttccttacgtgtgcgcgactcggctctgggggctgagggtgaaggaagggggcgcctctgtgtgagccctgtcctgcccctctgaagactcattggcaggatcaggatgtgcacagagatggtaaagtgtgaccatttgcccactgcataggatgccagtcgctgaaacaaattttcaaaagagttattcacaaggcagctgagttggagtaggaggccacacatctccctgcctgagggtaggtgtgttggatatttatggggtaaagaagcagggtgatctgtggtgtggggagaatgattggaagatgaagtaatctgtgtttcatgcacatgtaatgaaacttcatggctctttatgagacacatgtacagaaaacagaggtgcacgatctgaagaaggtagagattttggccctctgatggcaaaaggtctctactggacacctgcgcaggcccaaatgaagagttggtggtttcaacaaatttgccaagtccctgaaaagtaacctaggcagctgttacaatcatgacccacgtgtcagaggtgtcatctgtagctcagcttgtgagagactaagaatatatagctcagctccgtgacctccagaattagtgatctgtaaagccagtaaaaatcaggtaactaaagtgggaaaggggcttcagagagaagtacaaagcgtcggttcacatatacgaggctaggccagccacgtttgttaattatcagagttaagattccagtcttcatggagtcttggagactgaggtgagggttaccttcccaacagtggctctcagtttcttgggagatgcttctgactggcaaaaggtagatatttataactgggatcctctcttttagtaaatgcccggcagatggttggccccggtgagcaagagcagctctcttccttcatcagctctgtcttctttggttccatgcagagactcagttggtgccctcaggtgctcctggcttgcctgaggacacacatttacccagtcataataccgtgggggtgacaggagtgtcacagaaactccagaaaagagtgtatcacccccccagttatgtttcattcctgaaggaatcttacaaggagtcttgggtgttaagatgacatttagatggtgatagagggaccaggagagctggtagtggccatggactcttctctcacttgaggcttgctctacccacaggtgaaggcatgtccaaggccgtgtcttagaatacaaaatcatgggtagaaaacacatggtcaccactgagttctcacctggcatcaagctcttccacccctgatgcagaaaaggacagtgttttcctgtggcctgttgatgaaggaaatgccactgaaaagagtatagtggtttattgggctccaggattctgcacttggtagaagacatagtaatatagtttttcttattctttcaaaaaggaagaaaaggttcagtttagtcaggagttaggagaggacattgacgcatactgacgtgggaaggagcacaccggctgcttagttgtgaattgagtggcccagcctcagaactggaggcattcagtagaaaggac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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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