2025-08-29 17:18:29, GGRNA.v2 : RefSeq release 231 (Jul, 2025)
LOCUS XR_011603027 3437 bp RNA linear VRT 24-JAN-2025 DEFINITION PREDICTED: Chaetodon trifascialis NRDE-2, necessary for RNA interference, domain containing (nrde2), transcript variant X2, misc_RNA. ACCESSION XR_011603027 VERSION XR_011603027.1 DBLINK BioProject: PRJNA1210627 KEYWORDS RefSeq. SOURCE Chaetodon trifascialis (chevron butterflyfish) ORGANISM Chaetodon trifascialis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Chaetodontiformes; Chaetodontidae; Chaetodon. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_092069) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_039877785.1-RS_2025_01 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 01/22/2025 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3437 /organism="Chaetodon trifascialis" /mol_type="transcribed RNA" /isolate="fChaTrf1" /db_xref="taxon:109706" /chromosome="14" /sex="male" /tissue_type="heart, liver" /dev_stage="adult" /geo_loc_name="Saudi Arabia: Red Sea" /lat_lon="22.307781 N 38.967423 E" /collection_date="2019-07-20" /collected_by="Jessica Nowicki" gene 1..3437 /gene="nrde2" /note="NRDE-2, necessary for RNA interference, domain containing; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read" /db_xref="GeneID:139341999" misc_RNA 1..3437 /gene="nrde2" /product="NRDE-2, necessary for RNA interference, domain containing, transcript variant X2" /db_xref="GeneID:139341999" ORIGIN
ttgtatcatcatggcgctgtttccagctttcgcagaagtagagagcaacaaagttgaagattcgtccaaagatttagactggctgaagaataagagttttcagactggagatgccctctctcttcacaggcagtattttaagaagactgatgagaaggaatcaagtgtggacagagagctgagctctgtggaggaggagacagaagaccagaaagagggttatgctccacccaaaaagaagaaaaagaagagtgaaaagaagaggaagaagaagaaaaaacacaaaaagaagagtgggacgtattcggacagcaatggatctgactctgaaacgatttaccccagtgacctcaaaagggaaaaagaggcagatgggcctcaagctgctccgttagcaagccgtttctcctggctggatgacctccagtcgcccacagagcagctgttctgtgtggaccgtaaagcagaccaagccaactggacgtacaagtccctgtacagaggagatgttgccaggtataagaggaaaggcagctcgtccctgggtctggacccccacagacagggagtcagctgggaggagtcagagtcaaataagaaacagaaaagcagagccaagaaggaagcagcagacagatacttctcgacagtcagttgccagcagctcaggtctgaaccccccgttcctacaatccccaagattcccgagtgcagtgattccttcagccccaccaccttcctcccactgggtgacgatgaggagaacaaaggaggagagacgggtgacagagtggagacatcattcgtaaatcccctcggtgtgtatgactcctccacggccctgtggctgcagggaaggggacagccggagcagacagagcaggagcagaaggacacgcagacggggcagagtgtgcttttggccgggaggactgaagagtttaacaggcgactcagagagcagccagcagacacgcagctctggatcaaattcatacgataccaggatgagctaaatgcgatagcgtttggaggcaaggaggagcaatatggcagcgatgcggctgagcgccgtcactcttcccagcgagcagtcctggaaaaaaagctgagcatcgcagagcgagcagtggccaccaacccctgctgcattgctctgcagctggagaggctcaggatctgtcaagagctctgggagccctcgcttctggctaaagagtggaagaaactggtgttcctccacccaaacagtgcccccttgtggagggagtatctgctgttcacccagagctacttcagcaacttcactgtgccaaaggtcaactctgcctacgggaagtgtctgagcacgctcagtgctgtgcgtgacggcagcatggtgtctcacccagccctgccagggattgaggaggatatgttggatatcttcacccagcagtgtcacttcttgcgtcagtctggtcattcagagaaggcgatttctctgtttcaggccatgatcgattttactttctacaaacccgacagcgtacgagaactgtccaccaagcagcaggttgagttctttgagccattctgggacagcggggaggcgagggtcggagagccgggggccagaggttggaaagcctggatgctccagcaagagcgaggagggtggctacagcccagtgcagaggaagaagaggaggaggacgaggatgaggaggaggtgaaggatcggagccagcccagacacacggtctggttggacgtggagtcgtctcgcgaggcagctcactggctgccctggaggcccgacaaagccaaaggccagtcagaagaggactgcgaggaccctgacagacaggtattgtttgatgacatcggcccctcgctaatttgtctgtcctcaccagagctccagctccgtcttcttctccgtttcttgtcattcctggggctgcctgttgactcggtgctctctgctgccccctgtcagcctggcctgctgctggagaacctttctctgctcactcagggtcatcagctccagcgtcctctgacctctcatgacctacatgactctggggtcaactctgtaggtctcatgaccactctccagggaccaaggaagttggtggggctcgggaagcagggtgagacgtttgtcacccatgtgttcagtatggtccaacccgtccttcctgcccagcaccgagccatcctgtccctcagctggatgcggtacgagaagctcaagatcttgcgctgcctccatggtggcaacaaaaagcgtctccgctctcagggcaagagcagcaaacgagttgccaagcagctcctcaaagaatccgacaaccgctcgtcgttggcactgtggcgggagtacgcccacctggagtggatgcttggcaaccttgacgaggctcgcaaagtcttctccacggccacagctataggggggggcaaagggctgaggagccccaccctctgtgagctgtgtctgctgtgggcccagctggaagtggaggatgggtcaggtgtgcgaggaggagcactgactgatgccaccgtgtccccagctgtgtgtgtactagccaggctagcagaaggaacctcctcatcctcctcttcatcctgccagcccctctccccggtttccatcctgaaagcccggaggtcatatgaacaggctctgactgccggcttgtcagccctggaccaacacccccacagccctcaggcctgcggaaaaggtcaagaggaccttctaggagagaagctgaggctgagaggcctgacaggctgctacgctctgtttcagtacctcactgtgggcatccaagctgctagtgccatctacagccaggccagacagcacatggaggagctgcaccgcacactaatacttgacaagcagctcaacagtaacgaggaggccagcctcgctaacactgatgctagccaagctgtagttgtttccagccatatcagcaggcactatgctaacaggctagcttctgagtgtgaggtattagcagtgcagcaggcgacgttgcttagatatcacaacagcatcgctgtgtttcccctgctaacactgagacaggtgctgacctctgccatcaccacctggccctgcaacgcccccctctggagcatatatgtacaggtggaggaccgttaccacagtgctggccgggcacgtcgcttttttcactctgtaaccagggacaacagcagcgtgttgccgcgtctctttgccattgttgccgaacaaaaaaggaagcagctggtggatgctgctcagaggtaagcgtagaaaagaagatgagcaggtgcagggtcgttctgcactgatggaataagcattgcaacaccttcaaaaggtcttgttgccacgacaccgcattgcccatcctgccagagaacggcctcagtaaccgtatccgtgg
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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